Gene SNSL254_A0977 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSNSL254_A0977 
Symbol 
ID6482550 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Newport str. SL254 
KingdomBacteria 
Replicon accessionNC_011080 
Strand
Start bp981335 
End bp983281 
Gene Length1947 bp 
Protein Length648 aa 
Translation table11 
GC content54% 
IMG OID642736383 
Productmacrolide transporter ATP-binding /permease protein 
Protein accessionYP_002040143 
Protein GI194445699 
COG category[V] Defense mechanisms 
COG ID[COG1136] ABC-type antimicrobial peptide transport system, ATPase component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones84 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACGGCAT TGCTTGAACT GCGCAATGTG AGTCGCAGCT ACCCCTCCGG AGAAGAGCAG 
GTGGCGGTGT TGAAAGATAT CTCCCTGCAA ATCCACGCCG GGGAGATGGT GGCGATCGTC
GGCGTTTCCG GTTCTGGAAA ATCAACGCTG ATGAATATCC TCGGGTGCCT GGATAAACCG
ACCAGCGGCA CTTATCGGGT GGCGGGGCGG GACGTCTCGA CGCTGGACCC GGACGCGCTG
GCGCAGCTGC GGCGTGAGCA TTTTGGCTTT ATCTTTCAGC GCTACCATCT GTTGTCGCAT
TTAACGGCAG CGCAAAATGT TGAAATCCCC GCCGTCTACG CCGGCATTGA ACGCAAAAAA
CGCCAGGCGC GCGCCAGAGA GTTGCTTTTG CGGCTGGGAT TAAGCGATCG CGTCGATTAC
CCACCTTCAC AGCTTTCTGG CGGACAGCAG CAGCGTGTCA GTATTGCCCG CGCTCTGATG
AACGGCGGAC AGGTGATTCT GGCAGATGAG CCGACCGGCG CGCTGGATAG CCATTCCGGC
GAAGAGGTGA TGGCGATTTT GCGCCAACTG CGCGATCGCG GACATACGGT GATCATTGTG
ACGCACGATC CGCTGATTGC CGCCCAGGCG GAGCGGATTA TTGAAATTCA CGATGGCAAG
ATTGTCCATA ATCCGCCCGC GCAGGAAAAG AAACGCGAAC AGGGCGTTGA CGCTGCCGTA
GTTAATACGG CTCCCGGCTG GCGGCAATTT GCCAGCAGCT TTCGCGAAGC GCTGTCAATG
GCGTGGTTAG CGATGGCCGC TAACAAAATG CGTACTTTAC TGACCATGCT GGGAATTATT
ATCGGTATTG CGTCGGTGGT GTCGATTGTG GTGGTCGGCG ACGCCGCAAA ACAGATGGTA
CTGGCGGATA TCCGCGCTAT GGGCACTAAT ACGATTGATA TTCATCCAGG CAAAGATTTC
GGCGACGACA ACCCGCAGTA TCGACAGGCG CTGAAATATG ACGATCTGGT CGCTATTCAG
AAACAGCCGT GGGTTAACTC TGCGACGCCC AGCGTTTCAA AGAGCTTACG TCTTCGCTAT
GGCAATATTG ATATTGCCGT AAATGCTAAT GGCGTCAGTG GCGATTATTT TAACGTTTAC
GGCATGTCCT TTAGGGAGGG GAACACCTTC AATGCTGTAC AGCAACAGGA TCGCGCGCAG
GTGGTGGTGC TGGATGCCAA CACGCGACGC CAGCTATTTC CAAATAAAGC GAATGTCGTA
GGGGAAGTGG TGCTGGTGGG TAATATGCCG GTTATTGTTA TTGGCGTGGC GGAAGAGAAA
CCGTCCATGT ACGGCAATAG CAATCTGTTG CAAATTTGGT TGCCCTATAG CACGATGTCA
GATCGCATAA TGGGTCAGTC ATGGCTTAAC TCGATCACCG TTCGTGTGAA AGATGGCGTT
GATAGCGATC AGGCTGAACA GCAGCTTACC CGCCTGCTCA CCTTACGCCA CGGTAAAAAA
GACTTCTTCA CCTGGAATAT GGACAGCGTC CTGAAAACGG CTGAAAAAAC CACCTATACT
CTTCAGTTAT TTCTGACGCT GGTGGCCGTC ATTTCGCTGG TTGTCGGCGG CATCGGTGTT
ATGAATATTA TGCTGGTTTC CGTCACCGAG CGAACGCGTG AAATCGGCAT CCGTATGGCG
GTAGGCGCGC GCGCCAGCGA TGTGCTACAG CAGTTTCTTA TTGAAGCGGT GCTGGTTTGC
CTGGTTGGTG GAGCGCTGGG GATTAGCTTG TCGATGTTCA TCGCATTTAT GCTACAGCTT
TTCCTGCCCG GCTGGGAGAT CGGTTTTTCA CTGACTGCGC TGGCGAGCGC GTTTTTATGT
TCGACGTTTA CCGGGATACT GTTTGGCTGG CTACCGGCGA GAAACGCGGC GCGACTGGAC
CCGGTGGATG CGCTGGCAAG GGAGTAA
 
Protein sequence
MTALLELRNV SRSYPSGEEQ VAVLKDISLQ IHAGEMVAIV GVSGSGKSTL MNILGCLDKP 
TSGTYRVAGR DVSTLDPDAL AQLRREHFGF IFQRYHLLSH LTAAQNVEIP AVYAGIERKK
RQARARELLL RLGLSDRVDY PPSQLSGGQQ QRVSIARALM NGGQVILADE PTGALDSHSG
EEVMAILRQL RDRGHTVIIV THDPLIAAQA ERIIEIHDGK IVHNPPAQEK KREQGVDAAV
VNTAPGWRQF ASSFREALSM AWLAMAANKM RTLLTMLGII IGIASVVSIV VVGDAAKQMV
LADIRAMGTN TIDIHPGKDF GDDNPQYRQA LKYDDLVAIQ KQPWVNSATP SVSKSLRLRY
GNIDIAVNAN GVSGDYFNVY GMSFREGNTF NAVQQQDRAQ VVVLDANTRR QLFPNKANVV
GEVVLVGNMP VIVIGVAEEK PSMYGNSNLL QIWLPYSTMS DRIMGQSWLN SITVRVKDGV
DSDQAEQQLT RLLTLRHGKK DFFTWNMDSV LKTAEKTTYT LQLFLTLVAV ISLVVGGIGV
MNIMLVSVTE RTREIGIRMA VGARASDVLQ QFLIEAVLVC LVGGALGISL SMFIAFMLQL
FLPGWEIGFS LTALASAFLC STFTGILFGW LPARNAARLD PVDALARE