Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SNSL254_A0899 |
Symbol | ompX |
ID | 6484256 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salmonella enterica subsp. enterica serovar Newport str. SL254 |
Kingdom | Bacteria |
Replicon accession | NC_011080 |
Strand | + |
Start bp | 903854 |
End bp | 904369 |
Gene Length | 516 bp |
Protein Length | 171 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 642736311 |
Product | outer membrane protein X |
Protein accession | YP_002040071 |
Protein GI | 194443706 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3637] Opacity protein and related surface antigens |
TIGRFAM ID | [TIGR03304] outer membrane insertion C-terminal signal |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 77 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAAAAAA TTGCATGTCT TTCAGCACTG GCCGCTGTTC TGGCTTTTTC CGCAGGTACT GCAGTAGCTG CTACTTCTAC CGTTACCGGT GGTTACGCTC AGAGCGACGC GCAGGGCGTA GCGAATAAAA TGAGCGGTTT TAACCTGAAG TATCGTTACG AGCAGGACGA CAACCCGCTG GGCGTAATCG GTTCCTTCAC CTACACCGAA AAAGATCGTA CTAACGGTGC GGGCGATTAC AACAAAGGTC AGTACTACGG CATCACTGCC GGCCCGGCTT ACCGTCTGAA CGATTGGGCG AGCATCTACG GTGTAGTCGG TGTGGGTTAC GGTAAATTCC AGACGACCGA TTACCCAACC TACAAACATG ACACCAGCGA TTATGGCTTC TCCTATGGCG CTGGTCTGCA ATTCAACCCG ATGGAAAATG TTGCTCTGGA CTTCTCTTAC GAGCAGAGCC GTATTCGTAG CGTTGACGTT GGCACCTGGA TTGCTGGCGT AGGTTACCGC TTCTAA
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Protein sequence | MKKIACLSAL AAVLAFSAGT AVAATSTVTG GYAQSDAQGV ANKMSGFNLK YRYEQDDNPL GVIGSFTYTE KDRTNGAGDY NKGQYYGITA GPAYRLNDWA SIYGVVGVGY GKFQTTDYPT YKHDTSDYGF SYGAGLQFNP MENVALDFSY EQSRIRSVDV GTWIAGVGYR F
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