Gene SNSL254_A0883 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSNSL254_A0883 
Symbol 
ID6486408 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Newport str. SL254 
KingdomBacteria 
Replicon accessionNC_011080 
Strand
Start bp889907 
End bp891268 
Gene Length1362 bp 
Protein Length453 aa 
Translation table11 
GC content59% 
IMG OID642736295 
ProductATP-dependent RNA helicase RhlE 
Protein accessionYP_002040055 
Protein GI194442237 
COG category[J] Translation, ribosomal structure and biogenesis
[K] Transcription
[L] Replication, recombination and repair 
COG ID[COG0513] Superfamily II DNA and RNA helicases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.809863 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones78 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCTTTTG ATTCCCTGGG ATTAAACCCT GATATCCTGC GCGCCATTGC CGAGCAGGGT 
TACCGTGAAC CTACCCCTAT TCAGCAACAG GCGATTCCCG CCGTGCTGGA AGGCCGCGAT
CTGATGGCCA GCGCCCAGAC CGGAACCGGT AAAACGGCGG GTTTTACCCT GCCATTGTTG
CAGCATCTGA TTACCCATCA GCCGCACGCT AAAGGTCGTC GCCCGGTGCG CGCGTTGATC
CTCACGCCAA CCCGCGAGCT GGCGGCGCAA ATTGGCGAAA ACGTCAGAGA TTACAGTAAA
TATCTCAACA TTCGCTCGCT GGTGGTATTT GGCGGCGTAA GCATCAATCC GCAGATGATG
AAACTGCGCG GCGGCGTGGA TGTGCTGGTG GCGACGCCGG GACGTCTGCT CGACCTGGAA
CATCAAAATG CCGTGAAGCT GGATCAGATT GAGATTCTGG TACTGGATGA AGCCGACCGT
ATGCTGGATA TGGGCTTCAT TCACGACATT CGTCGCGTGC TGGCGAAACT GCCGGCGAAG
CGTCAGAATC TGCTGTTCTC CGCCACGTTC TCCGACGACA TCAAAGCGCT CGCCGAAAAG
CTGTTGCGCA ACCCGCTGGA AATCGAAGTG GCGCGCCGCA ACACGGCCTC AGAGCAGGTA
ACGCAGCACG TGCACTTTGT CGATAAAAAA CGTAAGCGCG AACTGCTGTC GCAGATGATT
GGCCAGGGCA ACTGGCAGCA GGTGTTGGTC TTCACCCGCA CCAAGCATGG CGCGAACCAT
CTGGCGGAAC AGCTTAATAA AGACGGTATT CGCAGCGCGG CGATCCACGG TAATAAATCG
CAGGGCGCAC GTACCCGCGC GCTGGCCGAT TTTAAATCCG GCGATATTCG CGTGCTGGTA
GCGACGGATA TTGCGGCGCG TGGTCTGGAT ATTGAAGAGC TGCCGCACGT GGTCAACTAT
GAACTGCCGA ACGTGCCGGA AGATTATGTA CACCGTATTG GCCGTACCGG TCGCGCGGCG
GCAACTGGCG AGGCGCTGTC GCTGGTCTGT GTTGACGAGC ATAAACTGTT GCGTGATATC
GAAAAATTGC TGAAAAAAGA GATCCCACGC ATTACGACGC CGGGCTATGA GCCGGACCCG
TCGATTAAAG CGGAGCCGAT TCAGAACGGT CGTCAGCAGC GCGGCGGCGG CGGTCGTGGA
CGCGGACAAA ATCAGGGGGG AGCGGGGCGC AGTCAGCAGC CGCGACGTCA GGATAGTGGG
GCAGCGAAGG CGAAACCAAA ACCGCGCACA GGCGAGGGGA AACCCTCGGG CGACAAAGCA
CGTCCGCCGC GTCGCCCGCG CAGAATCACG CCTGCCCAGT AA
 
Protein sequence
MSFDSLGLNP DILRAIAEQG YREPTPIQQQ AIPAVLEGRD LMASAQTGTG KTAGFTLPLL 
QHLITHQPHA KGRRPVRALI LTPTRELAAQ IGENVRDYSK YLNIRSLVVF GGVSINPQMM
KLRGGVDVLV ATPGRLLDLE HQNAVKLDQI EILVLDEADR MLDMGFIHDI RRVLAKLPAK
RQNLLFSATF SDDIKALAEK LLRNPLEIEV ARRNTASEQV TQHVHFVDKK RKRELLSQMI
GQGNWQQVLV FTRTKHGANH LAEQLNKDGI RSAAIHGNKS QGARTRALAD FKSGDIRVLV
ATDIAARGLD IEELPHVVNY ELPNVPEDYV HRIGRTGRAA ATGEALSLVC VDEHKLLRDI
EKLLKKEIPR ITTPGYEPDP SIKAEPIQNG RQQRGGGGRG RGQNQGGAGR SQQPRRQDSG
AAKAKPKPRT GEGKPSGDKA RPPRRPRRIT PAQ