Gene SNSL254_A0827 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSNSL254_A0827 
Symbol 
ID6484896 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Newport str. SL254 
KingdomBacteria 
Replicon accessionNC_011080 
Strand+ 
Start bp830806 
End bp831696 
Gene Length891 bp 
Protein Length296 aa 
Translation table11 
GC content35% 
IMG OID642736239 
Producttranscriptional regulator 
Protein accessionYP_002039999 
Protein GI194443546 
COG category[K] Transcription 
COG ID[COG0583] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones7 
Plasmid unclonability p-value0.237922 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones86 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGAAATTA GACAATTAGA ATATTTTGTA AGCGCTTCTT TGTTAGGTAA CTTAACCAGA 
GTTGCTGAGC GGCATTTTGT TTCTCAACCT AATATCACCA TTGCTATTAA GAAGTTAGAG 
ACTGAATTAG GGGTGACATT ATTTGATAGA AAGAAAAATA AACTTGTCCT TACTGAGGAG 
GGCATGTTTT TCTTACAAAA AATTGAACCT ATCCTTATTG CGTTAAAAAA TAGCGTAGCG 
GAAATGAAAG ATTATCGTAA TGAAAATGGT GGCATAGTAA CTTTGGGGAT CCCACCGATG 
ATAAGTTTGT TTCTTTTTTC ACCGCTCTTC AAGCATTTCC GAGAGATTTA TCCAGAGATG 
GAACTCTCTC TTGTTGAAGA GGGGACTTTT GGTTTACATG ATAAACTTTC TGCTGGAGAG 
CTGGATCTTG CTATTGTTAT TATTAATGAC TGTCCAAAAG AATTAGTTAC GGTACCATTA 
ATGACTCAGC AGCACGTGGT ATGTATGTCA GATAAACATC CTCTGGCAAA AAAGGATAGT 
ATCGATTGGG AAGATCTACA ATATGAGCCA TTGATACTAA TGAAAAAAGA TTCCTGGCAT 
AGAAAAACGA TTATTGAAGA ATGTACAAAG CGAGGAATTC ATACACATAT TTTTCTATCA 
TCAAACAGGA TTCAAACCAA CATAGATCTG GTTGCTAAAA ATGAAGGAAT TTCTTTCATT 
TTGGACGCTG TCGATCTTAA AGCCGAAAAA GTAATAACCA AGGCCATGAC TGAGCCGACT 
TATGTTACGA TTGGTTTGGC CTGGAAGAAA GATAAATATT TATCATATGC AACCAGAGCG 
TTAATTAAAT TCATTGAGGA TTATATTAAA GAACATTTTA CAATTAAATA A
 
Protein sequence
MEIRQLEYFV SASLLGNLTR VAERHFVSQP NITIAIKKLE TELGVTLFDR KKNKLVLTEE 
GMFFLQKIEP ILIALKNSVA EMKDYRNENG GIVTLGIPPM ISLFLFSPLF KHFREIYPEM 
ELSLVEEGTF GLHDKLSAGE LDLAIVIIND CPKELVTVPL MTQQHVVCMS DKHPLAKKDS 
IDWEDLQYEP LILMKKDSWH RKTIIEECTK RGIHTHIFLS SNRIQTNIDL VAKNEGISFI 
LDAVDLKAEK VITKAMTEPT YVTIGLAWKK DKYLSYATRA LIKFIEDYIK EHFTIK