| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SNSL254_A0709 |
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| Symbol | |
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| ID | 6484291 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Salmonella enterica subsp. enterica serovar Newport str. SL254 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011080 |
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| Strand | + |
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| Start bp | 718942 |
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| End bp | 720870 |
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| Gene Length | 1929 bp |
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| Protein Length | 642 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 642736122 |
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| Product | putative sigma-54 dependent transcriptional regulator |
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| Protein accession | YP_002039895 |
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| Protein GI | 194442495 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.890116 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 62 |
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| Fosmid unclonability p-value | 0.481573 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATAAGA CGAAAGATAT AGCCGCATCT CCTCTCTGTT TTGTCTCTCC TTACCCTCAA
CTGGCAAAGG CTGCCGAGGC GCTGGTCGCG CAGTTGGATT ACGCCGTCAC TATTCATCAA
ACGACGCTTA ATCGTATCCT GGATGAGCTA CCTTTATTAG AGTCCCGTGG GCACCAGGTA
CTGATTAGTC GTGGCGGCTG TGCGGAAATA TTAAAAAAGC ACAGTAAATT ACCGGTAGTC
GAAATTAAAA TGTCCGGCTA CGACATTCTT GATGCGCTTA TCCCTTTTAA AGGACAAAAA
GGCACTGTCG GTATTGTCGG CTTTTCCAGT GTGATCAAAG GATGCGCGCG CGTAGCGGAA
CAGTTAAATA TTAACTATAA AATTTTTACC TTACAGGGAA ATGATAAAGA AACGATTTCT
TGCCTGAAGC GGCAATTAGC GTCCACGCCA TTAGATTGCA TTGTTGGCGA TACCGTTTGT
CAGGATTATT TTTCACCGCT GGGCTCGCAA TTCCGTTTAC TTGATTCCAG CCCAGCCTCA
ATAACCGAAG CTCTGGAAGA AGCCCGCTCA TTATATCTGG CTTTTCGCAG CCAATTACTC
GAGCGTCATC ATCTGCAGCT GATTCTCGAT CAGTTTGATA AAGCTGTTAT AACGCTTGAT
GATACCGGCG CGTTACTGCA TTACAATAAA TATGCGAGCC AACTTTTTAA AATTAACGCC
TCCGGTGAAA TTTATGACGC GTCTTTTCTG AAACAGGTAT TGCTCCAGGA GCGGCATACA
TTACGTGAGG GAAAAACCGT CAGCGCGAAA GTCGTCGATA CGCCGCAAGG CGCGATGGTA
GTTAATCTGT ATCCGGTATT TGCGGCCAGA CAGTTAAGCC GGGTAGTGTT GACGATGCAA
ACCGTCTCCA GTTTACAGGG GGTGGAACAT CATGTTCGCC GCCAGGAACT GTCTCGCCGT
GGCTTGAGCG CCCGCTATCA TTTCGACGAT CTGCTTACCG AAAACCCGGA AATGCTGCGT
CGTCTGGCGA TCATTAAAAA TTATGCCGGT ACGGACGCGA CTATCTTAAT TAATGGCGAA
AGCGGGACGG GGAAAGAGGT GCTGGCGCAA AGTATTCATA ATGCCAGCCA ACGCGTCAAC
GGCCCGTTTG TCGCCATTAA CTGCGGCGCG ATGGCCCCTC AGATTCTGGA GAGCGAACTC
TTTGGCTATG TCGCCGGCGC ATTTACCGGC GCGTCGCCGA AAGGCAAAAT AGGCCTGTTT
GAATTAGCGC ACCACGGTAC CATTTTTCTG GATGAGATTA GCGAGCTGGA TAAACCGCTA
CAGACGCGCT TATTACGGGT ATTGCAGGAG CGGCAGATTA TGCGGCTGGG CTCAGACCAG
ATGATACCTG TTGATATTCG CGTGATTGCG GCGACCAATC AGACGTTAAC GAAGCTCATT
GCGGACGGGA CATTTCGCGA AGATCTTTAT TATCGGCTTA ACGTATTAAA AGTAACCACT
ATCCCGCTAC GCAAACGTCC GGAGGATATC AAAGCCATCG GCCTGTCGCT GCTTACTAGT
TTCAGCCAGC ATTATAAACG CCCGGCACTA ACGTTAACCC CGGCGCTGTG GCAAGAGCTT
CAGCGCTTCG CCTGGCCCGG AAACGTCAGG CAGTTAAGCA ATATTATCGA ACGGCTGGTG
CTCTCTATTG ATCACTCCCC GGCAACGCTG GATGAGGGCC GCCTCTTGCT GGACGATCTG
GAAGAGGGGA GCCGACGCGA GCCAAGTACC TGCCACGACT GCCAGATGCT GGCTGGCGAT
TATAAAACGA TTCGCCTGCG TATTTTGAGA AAATTATTAG AGGCGGAAAG GGATAATAAA
TCGTTAGTGG CGAAACGGTT AAATGTCGAT CGTACCTCGC TGACGCGCTG GATACGCGAG
TCGGCCTGA
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| Protein sequence | MNKTKDIAAS PLCFVSPYPQ LAKAAEALVA QLDYAVTIHQ TTLNRILDEL PLLESRGHQV
LISRGGCAEI LKKHSKLPVV EIKMSGYDIL DALIPFKGQK GTVGIVGFSS VIKGCARVAE
QLNINYKIFT LQGNDKETIS CLKRQLASTP LDCIVGDTVC QDYFSPLGSQ FRLLDSSPAS
ITEALEEARS LYLAFRSQLL ERHHLQLILD QFDKAVITLD DTGALLHYNK YASQLFKINA
SGEIYDASFL KQVLLQERHT LREGKTVSAK VVDTPQGAMV VNLYPVFAAR QLSRVVLTMQ
TVSSLQGVEH HVRRQELSRR GLSARYHFDD LLTENPEMLR RLAIIKNYAG TDATILINGE
SGTGKEVLAQ SIHNASQRVN GPFVAINCGA MAPQILESEL FGYVAGAFTG ASPKGKIGLF
ELAHHGTIFL DEISELDKPL QTRLLRVLQE RQIMRLGSDQ MIPVDIRVIA ATNQTLTKLI
ADGTFREDLY YRLNVLKVTT IPLRKRPEDI KAIGLSLLTS FSQHYKRPAL TLTPALWQEL
QRFAWPGNVR QLSNIIERLV LSIDHSPATL DEGRLLLDDL EEGSRREPST CHDCQMLAGD
YKTIRLRILR KLLEAERDNK SLVAKRLNVD RTSLTRWIRE SA
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