Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SNSL254_A0562 |
Symbol | |
ID | 6482185 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salmonella enterica subsp. enterica serovar Newport str. SL254 |
Kingdom | Bacteria |
Replicon accession | NC_011080 |
Strand | + |
Start bp | 571519 |
End bp | 573933 |
Gene Length | 2415 bp |
Protein Length | 804 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 642735979 |
Product | efflux ABC transporter permease protein |
Protein accession | YP_002039753 |
Protein GI | 194445108 |
COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
COG ID | [COG3127] Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.336553 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 81 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATAGCTC GCTGGTTCTG GCGCGAATGG CGCTCGCCGT CGCTGATTAT TGTCTGGCTG GCGTTGAGTC TGGCGGTGGC CTGCGTACTG GCGCTCGGCA GTATCAGCGA CCGGATGGAA AAAGGGTTAA GTCAGCAAAG CCGCGAGTTT ATGGCAGGCG ATCGGACTCT GCAAAGTTCG CGGGAGGTAC TGAAAGCCTG GCTTGAAGAG GCGCGTAAAC GCGGCCTTAA CGTGGGCGAG CAGTTAACCT TTGCGACCAT GACGTTTGCC GGCGATACGC CGCAACTGGC CAGCGTGAAG GCGGTAGATA GCGTTTATCC GATGTACGGC GAATTGCAAA CCCGTCCTGA CGGAGTGAAA CCGCAGCCGG GTAGCGTACT GCTGGCGCCG CGTCTGATGG CGCTGCTTAA TTTGAAAACG GGCGATACCA TTGATGTCGG CGACGTGACC TTGCGTATTG CCGGTGAAGT GGTGCAGGAG CCGGATTCCG GGTTTAACCC TTTTCAGATG GCGCCGCGTC TGATGATGAA TATGGCCGAT GTGGAAAAAA CCGGTGCGAT ACAGCCGGGG AGCCGCGTGA TGTGGCGGTA TAAATTCGGC GGAACGCCGC AACAGCTTGC TGGCTATGAA AGCTGGCTGT TACCGCAGCT TAAACCGGAA CATCGCTGGT ACGGACTGGA GGAGGATGAC GGGGCATTGG GGAAATCGCT CGAACGTTCG CAGCAGTTTT TGCTGCTTTC GGCGTTATTA ACGCTACTGC TGGCGGTAGC TGCCGTCGCG GTGGCGATGA GCCATTACTG CCGTAGCCGC TACGATCTGG TGGCGATTTT AAAAACGTTG GGCGCGGGCC GGGCCCAGTT GCGTAAACTT ATCATCGGAC AGTGGTTGAT GGTGCTGGGG CTTTCCGCCG TCACGGGAGG CGCGATTGGG TTACTGTTTG AAAACATATT GCTGGTGCTG CTAAAACCGG TATTGCCCGC CGATTTGCCG CCCGCCAGCC TGTGGCCCTG GCTGTGGGCG CTGGGCGCGA TGACGGTCAT CTCTCTGCTG GTCGGTTTAC GGCCTTATCG ATTGTTGCTG GCGACCCAGC CGCTACGGGT GCTGCGCCGC GATGTTGTTG CTCGCGTCTG GCCGTTAAAA ATTTATTTGC CTGTTGCCTG CGCCGTCGTG GTGGCGCTGC TCGCCGGATT GATGGGCGGA AGTATGCTGT TGTGGGCGGT TCTGGCGGGC GCCGTGATAC TGGCGCTGCT GTGCGGTCTG GTGGGCTGGA TGCTGCTTAA CGTGCTGCGC GGCATGACGT TGACGTCGCT ACCGCTGCGT CTGGCCGTCA GCCGACTTCT GCGTCAGCCG TGGTCAACGT TGAGTCAGCT TTCGGCGTTT TCGCTTTCGT TTATGCTGCT GGCGCTCTTG CTGGTGCTGC GCGGCGACCT CCTTGATCGC TGGCAACAGC AGCTCCCGCC GGAAAGTCCG AACTATTTCC TTATCAATAT TGCTTCAGAA CAGGTTGCGC CGCTGAAAGC CTTTTTGGCG GAACATCAGG TGATTCCGCA GACGTTTTAT CCGATTGTGC GGGCGCGGTT AACCAGGATA AACGGTAATC CGACGGAAGG TCAGCAGGAT GAGTCGCTCA ACCGTGAACT GAATTTGACC TGGCAGGATA CGCGCCCGGC GCATAATCCG CTGGTCGCCG GTCACTGGCC GCCAAAACCG GGCGAAGTCT CTATGGAAGA GGGGCTGGCG AAGCGGCTGA ACGTCAAACT CGGCGATAGC GTAACCTTTA TGGGCGATAC CCAGGCATTT AGCGCTAAAG TCACCAGCCT GCGTCAAGTG GACTGGGAAA GCCTGCGGCC CAACTTTTTC TTCATTTTTC CTTCCGGGGC GCTGGACGGG CAACCACAAA GCTGGCTGAC CAGTTTTCGC TGGGAGAATG GCAACGGCAT GTTAACGCAG CTTAACCGCG AGTTTCCTAC CGTCAGCCTG TTAGATATCG GGGCGATCCT GAAACAGGTG GGACAGGTGC TGGAGCAGGT CAGTCGGGCG CTGGAGGTGA TGGTTGTGCT AGTCACCCTC TGCGGCATGT TGCTATTACT GGCCCAGGTA CAGGTCGGGA TGCGTCAGCG CCATCAGGAG CTGGTGGTGT GGCGCACGTT AGGAGCCGGA AAGAAACTGT TGCGTACCAC ACTCTGGTGC GAATTCGCCA TGCTGGGATT AGTTGCCGGG TTGGTCGCCG CGATTGGCGC GGAAACGGCG CTGGCGATCT TACAAATCAA CGTTTTTGAT TTCCCCTGGG AGCCGGACTG GCGTTTATGG GGCGCACTGC CGTTTTACGG CGCGCTGCTG CTTTCCGTAT GCGGCGGCTG GCTTGGCGTT CGTTTGCTGA AAGGCAAAGC GCTATTCCGA CAGTTTAACG GATGA
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Protein sequence | MIARWFWREW RSPSLIIVWL ALSLAVACVL ALGSISDRME KGLSQQSREF MAGDRTLQSS REVLKAWLEE ARKRGLNVGE QLTFATMTFA GDTPQLASVK AVDSVYPMYG ELQTRPDGVK PQPGSVLLAP RLMALLNLKT GDTIDVGDVT LRIAGEVVQE PDSGFNPFQM APRLMMNMAD VEKTGAIQPG SRVMWRYKFG GTPQQLAGYE SWLLPQLKPE HRWYGLEEDD GALGKSLERS QQFLLLSALL TLLLAVAAVA VAMSHYCRSR YDLVAILKTL GAGRAQLRKL IIGQWLMVLG LSAVTGGAIG LLFENILLVL LKPVLPADLP PASLWPWLWA LGAMTVISLL VGLRPYRLLL ATQPLRVLRR DVVARVWPLK IYLPVACAVV VALLAGLMGG SMLLWAVLAG AVILALLCGL VGWMLLNVLR GMTLTSLPLR LAVSRLLRQP WSTLSQLSAF SLSFMLLALL LVLRGDLLDR WQQQLPPESP NYFLINIASE QVAPLKAFLA EHQVIPQTFY PIVRARLTRI NGNPTEGQQD ESLNRELNLT WQDTRPAHNP LVAGHWPPKP GEVSMEEGLA KRLNVKLGDS VTFMGDTQAF SAKVTSLRQV DWESLRPNFF FIFPSGALDG QPQSWLTSFR WENGNGMLTQ LNREFPTVSL LDIGAILKQV GQVLEQVSRA LEVMVVLVTL CGMLLLLAQV QVGMRQRHQE LVVWRTLGAG KKLLRTTLWC EFAMLGLVAG LVAAIGAETA LAILQINVFD FPWEPDWRLW GALPFYGALL LSVCGGWLGV RLLKGKALFR QFNG
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