| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SNSL254_A0525 |
|---|
| Symbol | |
|---|
| ID | 6483856 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salmonella enterica subsp. enterica serovar Newport str. SL254 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011080 |
|---|
| Strand | - |
|---|
| Start bp | 533644 |
|---|
| End bp | 536793 |
|---|
| Gene Length | 3150 bp |
|---|
| Protein Length | 1049 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 642735944 |
|---|
| Product | acriflavine resistance protein B |
|---|
| Protein accession | YP_002039718 |
|---|
| Protein GI | 194446686 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG0841] Cation/multidrug efflux pump |
|---|
| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.452979 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 90 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCTAATT TCTTTATCGA TCGCCCTATA TTTGCGTGGG TGATCGCCAT CATCATCATG
TTGGCAGGGG GGCTCGCGAT CCTCAAATTG CCGGTAGCGC AATATCCGAC GATTGCGCCA
CCAGCAGTGA CGATCTCCGC AACCTACCCT GGCGCTGATG CGAAAACGGT ACAGGATACC
GTCACGCAGG TTATCGAACA GAATATGAAC GGTATCGATA ACCTGATGTA TATGTCCTCC
AACAGTGACT CCACGGGGAC CGTGCAGATC ACGCTGACCT TTGAATCCGG CACCGATGCG
GACATCGCGC AGGTTCAGGT TCAGAACAAG TTGCAACTGG CAATGCCGTT ACTTCCCCAG
GAAGTACAGC AACAGGGCGT GAGCGTTGAG AAGTCCTCAA GTAGCTTCCT GATGGTAGTG
GGCGTCATTA ACACCGACGG CACCATGACC CAGGAGGATA TTTCGGATTA CGTTGCCGCC
AATATGAAAG ATCCGATCAG CCGTACCTCT GGGGTGGGCG ACGTTCAGCT GTTTGGTTCG
CAGTATGCGA TGCGTATCTG GATGAATCCG ACAGAGCTGA CCAAATACCA ACTGACGCCG
GTCGACGTGA TTAACGCGAT CAAAGCGCAG AACGCCCAGG TCGCGGCAGG TCAGCTCGGT
GGTACGCCGC CGGTAAAAGG CCAGCAGCTT AACGCATCGA TTATTGCCCA AACGCGTCTG
ACCTCAACGG ATGAGTTTGG CAAAATCCTG CTGAAAGTGA ATCAGGATGG CTCCCAGGTT
CGTCTGCGGG ATGTAGCGAA AATTGAGCTT GGCGGCGAAA ACTACGACGT CATCGCGAAA
TTTAACGGTC AGCCAGCGTC AGGTCTTGGC ATCAAACTGG CTACCGGCGC CAACGCGCTG
GATACCGCTA CCGCTATTCG CGCCGAACTG AAAAAAATGG AACCGTTCTT CCCGCCAGGG
ATGAAAATCG TCTACCCGTA TGACACCACG CCGTTCGTGA AGATCTCTAT TCATGAAGTG
GTAAAAACGC TGGTCGAAGC GATTATCCTC GTGTTCCTGG TGATGTACCT GTTCCTGCAG
AACTTCCGCG CGACGTTGAT TCCGACTATT GCGGTTCCGG TGGTGTTGTT GGGAACCTTT
GCCGTGCTTG CGGCATTCGG TTTCTCGATA AACACGCTGA CGATGTTCGG GATGGTGCTC
GCCATCGGCT TGCTGGTGGA TGACGCCATC GTGGTGGTCG AGAACGTCGA ACGTGTTATG
ACGGAAGAAG GCCTTCCGCC GAAGGAAGCG ACGCGCAAAT CCATGGGCCA GATTCAGGGC
GCATTGGTGG GTATCGCGAT GGTACTGTCG GCGGTATTTA TTCCGATGGC CTTCTTTGGC
GGCTCAACCG GGGCAATTTA TCGTCAGTTC TCTATCACCA TCGTATCGGC GATGGCGCTG
TCGGTGCTGG TCGCGCTGAT CCTGACGCCT GCGCTGTGCG CGACGATGCT CAAACCCGTC
GCCAAAGGCG ATCATGGCGA AGGGAAAAAA GGCTTTTTCG GCTGGTTTAA CCGCCTGTTC
GATAAGAGCA CGCATCACTA CACCGATAGC GTAGGCAATA TTCTGCGCAG CACCGGGCGT
TATCTGCTGC TCTATCTCAT TATCGTCGTC GGTATGGCTT ATCTGTTCGT TCGTCTGCCA
AGCTCTTTCT TGCCGGATGA AGACCAGGGC GTATTCCTGA CAATGGTCCA GCTCCCCGCC
GGCGCGACGC AAGAGCGCAC GCAAAAAGTG CTGGATGAGG TCACGGATTA CTATCTGAAC
AAAGAGAAAG CCAACGTTGA ATCGGTATTC GCCGTCAACG GCTTCGGTTT TGCAGGGCGC
GGTCAGAATA CCGGTATTGC ATTCGTGTCG TTGAAAGACT GGGCCGATCG TCCAGGCGAA
AAAAACAAGG TTGAAGCGAT TACCCAGCGG GCAACCGCAG CGTTTTCACA AATTAAAGAT
GCGATGGTCT TCGCCTTTAA CCTGCCGGCG ATTGTTGAAC TGGGCACCGC AACCGGGTTT
GACTTCGAGT TGATTGACCA GGCGGGACTT GGTCATGAAA AACTCACCCA GGCACGTAAT
CAGTTGTTCG GCGAGGTGGC GAAATATCCT GATCTGCTGG TCGGCGTTCG ACCTAACGGC
CTGGAAGATA CGCCGCAGTT TAAAATCGAT ATCGACCAGG AAAAAGCTCA GGCGCTGGGC
GTGTCTATTA GCGACATTAA TACCACGCTG GGCGCAGCAT GGGGCGGCAG CTATGTAAAC
GACTTTATCG ATCGCGGTCG TGTGAAGAAA GTTTACGTGA TGTCCGAAGC GAAATACCGC
ATGTTGCCGG ATGATATTAA CGACTGGTAC GTTCGTGGTA GCGATGGTCA GATGGTGCCG
TTCTCCGCAT TCTCCTCTTC CCGCTGGGAA TATGGTTCGC CACGTCTGGA ACGCTATAAC
GGTCTGCCTT CGATGGAAAT TCTGGGTCAG GCGGCGCCAG GCAAGAGTAC TGGTGAAGCG
ATGGCGATGA TGGAAGAACT GGCCAGCAAG CTGCCGTCAG GCATTGGGTA TGACTGGACC
GGGATGTCCT ACCAGGAGCG GTTGTCCGGC AACCAGGCCC CTGCCCTGTA TGCTATCTCG
CTGATCGTCG TCTTCCTGTG TCTGGCGGCA TTGTATGAGA GCTGGTCTAT CCCGTTCTCC
GTAATGCTGG TTGTTCCGCT TGGGGTTATC GGCGCGCTGC TGGCTGCCAC CTTCCGCGGA
CTGACTAACG ACGTTTACTT CCAGGTGGGC CTGCTCACAA CCATTGGGTT GTCGGCGAAG
AACGCGATAC TTATCGTCGA ATTCGCCAAA GACTTAATGG ATAAAGAAGG GAAAGGTCTG
GTAGAAGCGA CGCTGGAGGC CGTCCGGATG CGTTTGCGCC CGATTCTGAT GACCTCGTTA
GCGTTCATGC TGGGGGTTAT GCCGCTGGTT ATCAGTTCCG GCGCGGGTTC CGGCGCGCAG
AATGCGGTAG GTACTGGCGT ACTGGGCGGG ATGGTAACGG CAACCGTACT GGCTATTTTC
TTCGTACCGG TCTTCTTCGT GGTGGTACGC CGCCGCTTTA GCCGTAAAAG CGAAGATATT
GAGCATAGTC ATTCGACAGA ACATCGCTGA
|
|---|
| Protein sequence | MPNFFIDRPI FAWVIAIIIM LAGGLAILKL PVAQYPTIAP PAVTISATYP GADAKTVQDT
VTQVIEQNMN GIDNLMYMSS NSDSTGTVQI TLTFESGTDA DIAQVQVQNK LQLAMPLLPQ
EVQQQGVSVE KSSSSFLMVV GVINTDGTMT QEDISDYVAA NMKDPISRTS GVGDVQLFGS
QYAMRIWMNP TELTKYQLTP VDVINAIKAQ NAQVAAGQLG GTPPVKGQQL NASIIAQTRL
TSTDEFGKIL LKVNQDGSQV RLRDVAKIEL GGENYDVIAK FNGQPASGLG IKLATGANAL
DTATAIRAEL KKMEPFFPPG MKIVYPYDTT PFVKISIHEV VKTLVEAIIL VFLVMYLFLQ
NFRATLIPTI AVPVVLLGTF AVLAAFGFSI NTLTMFGMVL AIGLLVDDAI VVVENVERVM
TEEGLPPKEA TRKSMGQIQG ALVGIAMVLS AVFIPMAFFG GSTGAIYRQF SITIVSAMAL
SVLVALILTP ALCATMLKPV AKGDHGEGKK GFFGWFNRLF DKSTHHYTDS VGNILRSTGR
YLLLYLIIVV GMAYLFVRLP SSFLPDEDQG VFLTMVQLPA GATQERTQKV LDEVTDYYLN
KEKANVESVF AVNGFGFAGR GQNTGIAFVS LKDWADRPGE KNKVEAITQR ATAAFSQIKD
AMVFAFNLPA IVELGTATGF DFELIDQAGL GHEKLTQARN QLFGEVAKYP DLLVGVRPNG
LEDTPQFKID IDQEKAQALG VSISDINTTL GAAWGGSYVN DFIDRGRVKK VYVMSEAKYR
MLPDDINDWY VRGSDGQMVP FSAFSSSRWE YGSPRLERYN GLPSMEILGQ AAPGKSTGEA
MAMMEELASK LPSGIGYDWT GMSYQERLSG NQAPALYAIS LIVVFLCLAA LYESWSIPFS
VMLVVPLGVI GALLAATFRG LTNDVYFQVG LLTTIGLSAK NAILIVEFAK DLMDKEGKGL
VEATLEAVRM RLRPILMTSL AFMLGVMPLV ISSGAGSGAQ NAVGTGVLGG MVTATVLAIF
FVPVFFVVVR RRFSRKSEDI EHSHSTEHR
|
|---|
| |