| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SNSL254_A0485 |
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| Symbol | |
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| ID | 6482272 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Salmonella enterica subsp. enterica serovar Newport str. SL254 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011080 |
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| Strand | + |
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| Start bp | 496174 |
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| End bp | 497667 |
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| Gene Length | 1494 bp |
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| Protein Length | 497 aa |
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| Translation table | 11 |
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| GC content | 40% |
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| IMG OID | 642735906 |
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| Product | tetratricopeptide repeat protein |
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| Protein accession | YP_002039680 |
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| Protein GI | 194445524 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0790] FOG: TPR repeat, SEL1 subfamily |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 47 |
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| Fosmid unclonability p-value | 0.00791443 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGATAAAAC GGAAATGGAG TATTTTGTTT CTGCTTGGGC TTTCTTTCGC ATCGGTATGT
CAGGCAGGTG ATGATATTGA CGCGTTGTAT AGCCGTATTG CGCAGAAAGA TATTCAGGCG
CTAAATGAGC TAAAAGCGTT AGCCAAAGAT AATAATGCTC AAGCGCTGGC GGAGTTGGGG
TTTATTTATG AGTACGGTGT TTCAGTATCT GTGGATATTC CGCAAGCAAT AAAGTACTAC
GAGCAGGCTT GTGATTTGGA CGGTGATTAT GGTTGCTTTA ATGCAGCTTA TTTCTATGAA
TATGGCATCG GTACCCAAAA GGACATTACG CAAGCGAAAA CATTAGCAAA ACAGCTTAGA
GAAAAAATTA ATCTATCCAA TATCAATCTC GATAAAAAGG TGAGTGAACG TATAATTGGG
AGTGTTTATA GTAATAAACT TGAGGCATAT AGAGACCTTT CATTTCGTCC TCATTTTATT
CAAGGCTTAA GTTTCTATTT TTATGCCCCG CAATCAGATG AGCGAAAACT GCTGAGTCGA
ATAGGTTTTG ACTCATCACA TCTTGCGCGG ATAGCGATAC TCTGGGCGAG AGAGGGTGAT
CCTGAGGTCG CGTATCAGAC GGCAAAACTG GTCTCTACTT TGTATTTTAA TAATGAAACG
AAAACGATAG ATATTGCTGA AGCGCTGAAA TGGCTCCGAA TTTCGGCCGA GAAGGGGGAT
GCCGACTCAC AGACGCTGTT AGGTTTTCTT TATGAACACG CTGGATTGGG ATTACAACCA
GATGGAGAGA AAGCCAGGAA ATGGTATGAA ATGGCGGCGC AGCAAGGTAA TGGAGAAGCA
TTGTATACGT TAGGTCGTAT GTACTATTCT GGCGTAATGG TTAACGTTGA TTACGATAAA
GCGCTGTATT TTTTTAAAAA AGCTTATGAG AAAGAATTAC AGGCGGCCGC TGATTATTTA
GCACAGATGT ATTTTAATGG CCAGAGTGTA GATGTCGATT GCCAACAATC CTGGCACTAT
TACGATAACA GCTATATAAA AAAGATGACA CAACGCGATT ATCTTGATTA TTGTGAAAAA
GATCGAAAGC GCCGTAATGA TTTTAGTCAG CAACTTCCTG AGCTGACATT AGAAAAATAT
GCGGGATTAT TTGGCAGGAT TGATAATATT CCTCTGTGTC AGATTGGATT TGTTGTCAAT
ACGAATAAGT TAATTCATGT TGCGAACTTA CGTGTGGAAT TGATATTAAA AAATGATGCT
GGAGTTAGTG ACGAAAGAAT GGTCGCTTTT CCTCCTTTGG GTCTCAATAC TCTGGGTGCT
GAACAGGGTA TGGGGGATTC TTTTAAGTCG ATGGGATATC TCTTGATGAA AAACGGTGAC
TTGTGTGATT ACCATAAACT TACTTTCACC GTGAAGTCAG CGACGGCAAC AATCAATGGT
AAAAAAGTTG ATTTACTGAA AACGGATAAT TTACATATTA TTCAGAATCG ATAA
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| Protein sequence | MIKRKWSILF LLGLSFASVC QAGDDIDALY SRIAQKDIQA LNELKALAKD NNAQALAELG
FIYEYGVSVS VDIPQAIKYY EQACDLDGDY GCFNAAYFYE YGIGTQKDIT QAKTLAKQLR
EKINLSNINL DKKVSERIIG SVYSNKLEAY RDLSFRPHFI QGLSFYFYAP QSDERKLLSR
IGFDSSHLAR IAILWAREGD PEVAYQTAKL VSTLYFNNET KTIDIAEALK WLRISAEKGD
ADSQTLLGFL YEHAGLGLQP DGEKARKWYE MAAQQGNGEA LYTLGRMYYS GVMVNVDYDK
ALYFFKKAYE KELQAAADYL AQMYFNGQSV DVDCQQSWHY YDNSYIKKMT QRDYLDYCEK
DRKRRNDFSQ QLPELTLEKY AGLFGRIDNI PLCQIGFVVN TNKLIHVANL RVELILKNDA
GVSDERMVAF PPLGLNTLGA EQGMGDSFKS MGYLLMKNGD LCDYHKLTFT VKSATATING
KKVDLLKTDN LHIIQNR
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