| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SNSL254_A0463 |
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| Symbol | ribD |
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| ID | 6486693 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Salmonella enterica subsp. enterica serovar Newport str. SL254 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011080 |
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| Strand | + |
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| Start bp | 474248 |
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| End bp | 475351 |
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| Gene Length | 1104 bp |
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| Protein Length | 367 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 642735884 |
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| Product | bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase |
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| Protein accession | YP_002039658 |
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| Protein GI | 194442362 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG0117] Pyrimidine deaminase
[COG1985] Pyrimidine reductase, riboflavin biosynthesis |
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| TIGRFAM ID | [TIGR00227] riboflavin-specific deaminase C-terminal domain
[TIGR00326] riboflavin biosynthesis protein RibD |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.951708 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 86 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAGGATG AGTTTTACAT GGCGCGAGCG CTCAAACTGG CGCAGCGTGG ACGTTTCACC
ACTCACCCGA ACCCTAATGT CGGCTGTGTC ATTGTTAACA ATGGCGACAT CGTCGGCGAA
GGTTATCACC ATCGCGCCGG AGAGCCGCAC GCCGAGGTCC ATGCGCTGCG GATGGCGGGC
GCAAAAGCCA AAGGCGCAAC CGCCTATGTC ACGCTTGAAC CCTGTAGCCA TCATGGGCGA
ACGCCGCCAT GTTGCGATGC GCTGATTGCG GCCGGCGTCG CGCGCGTGGT CGCCGCGATG
CAGGACCCGA ACCCACAGGT CGCCGGGCGC GGGCTGTATC GCCTGCAACA GGCGGGTATT
GCGGTCAGCC ACGGGTTAAT GATGAGTGAA GCGGAGGCGC TCAATAAAGG CTTCCTCAAA
CGGATGCGTA CCGGATTCCC TTATCTTCAG CTTAAACTGG GCGCCTCCGT GGATGGACGG
ACGGCGATGG CCAGCGGCGA AAGCCAGTGG ATCACCTCGC CGCAGGCCCG GCGCGACGTT
CAGCGCTTGC GTGCGCAAAG TCACGCTATC TTAACCAGTA GCGCGACGGT ATTGGCTGAC
GATCCGGCCT TGACGGTGCG TTGGGCGGAG TTAGATGCCT CTACGCAGGC GTCTTACCCG
CAGGAAAATC TGCGCCAGCC GGTGCGAATT GTTATCGACA GCCAAAACCG GGTAACGCCT
GCGCATCGTA TTGTGCAGCA GCCTGGCGAA ACGTGGATCG CGCGTACCCA GGAAGATAGC
CGCGCGTGGC CCGATGCGGT TCGTACTATC AGCGTGCCGG CGCACAACGG ACATTTGGAT
CTGGTTGTAC TGATGATGCA GTTAGGCAGG CAGCAGATTA ATAGCATATG GGTTGAAGCC
GGACCGGGAC TGGCAGGCGC GTTGTTGCAA GCCGGGCTGG TGGATGAACT GATTGTCTAT
GTCGCGCCTA AATTGTTGGG AACCCAGGCG CGGGGATTAT GCGAATTGCC GGGGCTTGAG
AAGCTCGCCG ACGCGCCGCA ATTTACCTTC AGCGAAATAC GCCATGTCGG CCCGGATGTT
TGCCTGCATA TGGTGAGCGC ATGA
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| Protein sequence | MQDEFYMARA LKLAQRGRFT THPNPNVGCV IVNNGDIVGE GYHHRAGEPH AEVHALRMAG
AKAKGATAYV TLEPCSHHGR TPPCCDALIA AGVARVVAAM QDPNPQVAGR GLYRLQQAGI
AVSHGLMMSE AEALNKGFLK RMRTGFPYLQ LKLGASVDGR TAMASGESQW ITSPQARRDV
QRLRAQSHAI LTSSATVLAD DPALTVRWAE LDASTQASYP QENLRQPVRI VIDSQNRVTP
AHRIVQQPGE TWIARTQEDS RAWPDAVRTI SVPAHNGHLD LVVLMMQLGR QQINSIWVEA
GPGLAGALLQ AGLVDELIVY VAPKLLGTQA RGLCELPGLE KLADAPQFTF SEIRHVGPDV
CLHMVSA
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