Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SNSL254_A0459 |
Symbol | |
ID | 6485710 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salmonella enterica subsp. enterica serovar Newport str. SL254 |
Kingdom | Bacteria |
Replicon accession | NC_011080 |
Strand | - |
Start bp | 471941 |
End bp | 472804 |
Gene Length | 864 bp |
Protein Length | 287 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 642735880 |
Product | nucleoside-specific channel-forming protein tsx |
Protein accession | YP_002039654 |
Protein GI | 194444768 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3248] Nucleoside-binding outer membrane protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 89 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAAAAAA CTTTACTCGC AGTCAGCGCA GCGCTGGCGC TCACCTCATC TTTTACTGCT AACGCAGCAG AAAATGATCA GCCGCAGTAT TTGTCCGACT GGTGGCACCA GAGTGTAAAC GTGGTAGGCA GCTACCATAC CCGTTTCTCG CCGAAATTGA ACAACGACGT TTATCTGGAA TATGAAGCAT TTGCCAAAAA AGACTGGTTT GATTTCTACG GCTATATCGA TATTCCCAAA ACCTTTGATT GGGGTAACGG CAACGATAAA GGTATCTGGT CCGACGGTTC TCCGCTGTTC ATGGAAATCG AACCGCGTTT CTCGATTGAT AAGCTGACCG GCGCAGACCT GAGCTTCGGC CCGTTTAAAG AGTGGTATTT CGCCAACAAC TACATCTACG ATATGGGCGA TAACAAAGCC AGCCGCCAGA GCACGTGGTA TATGGGTCTG GGGACCGATA TCGACACCGG CCTGCCGATG GGCCTGTCGC TGAACGTGTA TGCGAAATAT CAGTGGCAAA ACTACGGTGC TTCCAATGAA AACGAATGGG ACGGCTACCG TTTCAAAGTG AAATACTTCG TCCCCATCAC CGATCTGTGG GGCGGTAAAC TGAGCTATAT CGGCTTTACC AACTTTGACT GGGGATCTGA TTTAGGCGAC GATCCGAACC GTACCAGCAA CTCCATCGCT TCCAGCCATA TCCTGGCGCT GAACTACGAT CACTGGCACT ACTCGGTCGT TGCGCGTTAC TTCCATAACG GCGGACAGTG GCAGAATGGC GCAAAACTGA ACTGGGGCGA CGGCGATTTC AGCGCGAAAT CTACCGGCTG GGGCGGCTAC CTGGTCGTGG GTTATAACTT CTAA
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Protein sequence | MKKTLLAVSA ALALTSSFTA NAAENDQPQY LSDWWHQSVN VVGSYHTRFS PKLNNDVYLE YEAFAKKDWF DFYGYIDIPK TFDWGNGNDK GIWSDGSPLF MEIEPRFSID KLTGADLSFG PFKEWYFANN YIYDMGDNKA SRQSTWYMGL GTDIDTGLPM GLSLNVYAKY QWQNYGASNE NEWDGYRFKV KYFVPITDLW GGKLSYIGFT NFDWGSDLGD DPNRTSNSIA SSHILALNYD HWHYSVVARY FHNGGQWQNG AKLNWGDGDF SAKSTGWGGY LVVGYNF
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