Gene SNSL254_A0456 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSNSL254_A0456 
Symbol 
ID6482685 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Newport str. SL254 
KingdomBacteria 
Replicon accessionNC_011080 
Strand+ 
Start bp470103 
End bp470795 
Gene Length693 bp 
Protein Length230 aa 
Translation table11 
GC content53% 
IMG OID642735878 
Producthelix-turn-helix, type 11 
Protein accessionYP_002039652 
Protein GI194443177 
COG category[K] Transcription 
COG ID[COG2378] Predicted transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones100 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCAGAC GCGCTGACCG TTTGTTTCAG ATCGTGCAAA TTTTGCGGGG TAGACGACTG 
ACGACGGCAG CGCTGTTGGC ACAGCGGCTT GCGGTTTCTG AACGGACGAT TTATCGCGAT 
ATTCGCGATC TGTCGTTATC CGGTGTGCCT GTCGAAGGTG AAGCGGGGAG CGGATACCGT 
TTAATGGCAG GTTTTGATCT GCCACCCTTG ATGCTTACCC ATCGTGAATC GGAAGCACTG 
ATGGTGGCTA TACGGTTATT GAAAACCTGG GGCGGCGATT CGCTATCGCG CGAGCTTGAA 
TCCGCCCAGG AAAAAGTGTT GGCTATTTTA CCGGAAGAGA GCCGTCGTAA AGCGGAGCAG 
ACACGGATTT ACGCTCCGGA TTTGGGTACA TCTCCACATT CGCGCAGCGC GTTTGATCTT 
ATCCATCAGG CCGTTTCGGC GCAGCAGGTG TTGGCGCTAC ATTATCGTGA TGAAGCGGGG 
CATCTCTCTT CGCGGGATAT ACAACCGCTG GGATTGTTTT TCTGGGGAGA GCACTGGCTG 
CTGGTTGCCT GGTGTGAGAG ACGGGAAGAC TATCGGTGTT TTCGCCTCGA TCGCTGTTTA 
CAAATTACTC CGCTTAACCG GCGATTTCGT GAAACAATCG ACCGTTCTTT GCGTGATTTT 
TTGCGTAAAG TCGAGCACGA AAAAATGCCG TAA
 
Protein sequence
MTRRADRLFQ IVQILRGRRL TTAALLAQRL AVSERTIYRD IRDLSLSGVP VEGEAGSGYR 
LMAGFDLPPL MLTHRESEAL MVAIRLLKTW GGDSLSRELE SAQEKVLAIL PEESRRKAEQ 
TRIYAPDLGT SPHSRSAFDL IHQAVSAQQV LALHYRDEAG HLSSRDIQPL GLFFWGEHWL 
LVAWCERRED YRCFRLDRCL QITPLNRRFR ETIDRSLRDF LRKVEHEKMP