Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SNSL254_A0409 |
Symbol | prpC |
ID | 6486440 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salmonella enterica subsp. enterica serovar Newport str. SL254 |
Kingdom | Bacteria |
Replicon accession | NC_011080 |
Strand | + |
Start bp | 423445 |
End bp | 424614 |
Gene Length | 1170 bp |
Protein Length | 389 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 642735833 |
Product | methylcitrate synthase |
Protein accession | YP_002039607 |
Protein GI | 194445712 |
COG category | [C] Energy production and conversion |
COG ID | [COG0372] Citrate synthase |
TIGRFAM ID | [TIGR01800] 2-methylcitrate synthase/citrate synthase II |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 33 |
Fosmid unclonability p-value | 0.0000027346 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGACAGACA CGACGATCCT GCAAAACAAC ACGCATGTCA TTAAGCCTAA AAAATCAGTC GCGCTTTCCG GCGTACCTGC CGGAAATACC GCTCTGTGTA CCGTGGGAAA AAGCGGTAAC GATCTGCACT ATCGCGGTTA CGACATTCTC GATCTGGCGG AGCACTGCGA ATTTGAAGAA GTCGCGCATT TACTGATCCA CGGAAAATTA CCGACCCGCG ACGAGCTGAA CGCGTATAAA AGCAAGTTAA AAGCGCTGCG CGGATTACCC GCCAATGTCC GTACCGTTCT GGAAGCGTTA CCGGCGGCCT CGCACCCGAT GGACGTGATG CGTACCGGCG TTTCCGCGCT GGGCTGTACC CTGCCGGAAA AAGAGGGACA TACCGTCTCC GGCGCGCGCG ATATTGCCGA TAAGCTGTTG GCTTCGCTCA GCTCTATCCT TCTTTACTGG TATCACTACA GCCACAACGG CGAACGTATT CAGCCGGAAA CCGACGATGA TTCCATCGGC GGCCATTTCC TGCATCTGCT GCACGGTGAA AAGCCAACCC AAAGCTGGGA AAAGGCGATG CATATTTCGC TGGTGCTGTA TGCCGAGCAT GAGTTCAACG CCTCGACGTT CACCAGCCGG GTGATTGCCG GAACCGGCTC GGATGTCTAC TCCGCGATTA TCGGCGCGAT TGGCGCGCTG CGCGGCCCGA AACACGGCGG GGCGAATGAG GTGTCGCTGG AAATTCAACA GCGTTATGAA ACGCCGGACG AGGCAGAGGC GGATATCCGT AAACGCGTGG AAAACAAAGA GGTGGTGATT GGCTTTGGAC ATCCGGTTTA CACCATCGCC GACCCGCGCC ATCAGGTGAT CAAACGGGTG GCGAAACAGC TTTCAGAAGA AGGCGGCTCG CTGAAGATGT ACCACATCGC CGACCGTCTG GAAACGGTGA TGTGGGAGAC CAAAAAGATG TTCCCGAATC TCGACTGGTT TTCGGCGGTC TCCTACAACA TGATGGGCGT CCCTACCGAA ATGTTCACCC CGCTGTTTGT CATCGCCCGC GTTACCGGCT GGGCGGCGCA CATTATTGAA CAGCGTCAGG ACAACAAAAT TATTCGCCCC TCTGCCAACT ATACCGGGCC GGAAGATCGT CCGTTTGTCT CGATAGACGA TCGTTGCTAA
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Protein sequence | MTDTTILQNN THVIKPKKSV ALSGVPAGNT ALCTVGKSGN DLHYRGYDIL DLAEHCEFEE VAHLLIHGKL PTRDELNAYK SKLKALRGLP ANVRTVLEAL PAASHPMDVM RTGVSALGCT LPEKEGHTVS GARDIADKLL ASLSSILLYW YHYSHNGERI QPETDDDSIG GHFLHLLHGE KPTQSWEKAM HISLVLYAEH EFNASTFTSR VIAGTGSDVY SAIIGAIGAL RGPKHGGANE VSLEIQQRYE TPDEAEADIR KRVENKEVVI GFGHPVYTIA DPRHQVIKRV AKQLSEEGGS LKMYHIADRL ETVMWETKKM FPNLDWFSAV SYNMMGVPTE MFTPLFVIAR VTGWAAHIIE QRQDNKIIRP SANYTGPEDR PFVSIDDRC
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