| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SNSL254_A0405 |
|---|
| Symbol | |
|---|
| ID | 6484220 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salmonella enterica subsp. enterica serovar Newport str. SL254 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011080 |
|---|
| Strand | - |
|---|
| Start bp | 419269 |
|---|
| End bp | 419901 |
|---|
| Gene Length | 633 bp |
|---|
| Protein Length | 210 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 642735829 |
|---|
| Product | putative transport protein |
|---|
| Protein accession | YP_002039603 |
|---|
| Protein GI | 194443842 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1280] Putative threonine efflux protein |
|---|
| TIGRFAM ID | [TIGR00949] The Resistance to Homoserine/Threonine (RhtB) Family protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 0.000000000145475 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGGAGCAGT TTCATGCCGT TGTGCTTACC GTCAGTCTGT TTGTGTTAAC CTTTTTTAAT
CCCGGCGCGA ATCTGTTTGT GGTGGTGCAA ACCAGCCTCG CATCAGGACG CCGGGCGGGA
GTCATCACCG GCCTGGGCGT CGCCACGGGA GACGCCTTTT ATTCCGGGCT GGGGCTTTTC
GGTCTGGCGA CGCTCATTAC GCAATGCGAA GCGGTATTTT CTCTTATCAA AATTGTCGGC
GGCGCCTATT TATTATGGTT CGCCTGGAAC AGTATTCGTC ACCAGGCGAC GCCGCAAATG
AGCACGCTCC AGACGCCAAT TGCCGCCCCG TGGACAATTT TCTTTCGCCG GGGATTAATG
ACCGATTTAT CCAATCCGCA AACCGTACTG TTTTTTATCA GTATTTTTTC CGTAACGCTT
AGCGCAGAAA CGCCCACATG GGCAAGATTA ATGGCCTGGG CCGGAATTGT GCTGTCATCC
GTTATCTGGC GTATTTTTCT CAGCCAGGCC TTTTCGCTTC CCGCAGTCCG CCGCGCTTAT
GGGCGTATAC AGCGCATTGC CAGCCGTGTT ATCGGCGCCA TTATCGGGAT GTTTGCGCTC
AGACTTCTCT ATGAAGGCGT GACGCACCGC TAG
|
|---|
| Protein sequence | MEQFHAVVLT VSLFVLTFFN PGANLFVVVQ TSLASGRRAG VITGLGVATG DAFYSGLGLF
GLATLITQCE AVFSLIKIVG GAYLLWFAWN SIRHQATPQM STLQTPIAAP WTIFFRRGLM
TDLSNPQTVL FFISIFSVTL SAETPTWARL MAWAGIVLSS VIWRIFLSQA FSLPAVRRAY
GRIQRIASRV IGAIIGMFAL RLLYEGVTHR
|
|---|
| |