Gene SNSL254_A0401 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSNSL254_A0401 
SymbolcydB 
ID6485951 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Newport str. SL254 
KingdomBacteria 
Replicon accessionNC_011080 
Strand
Start bp414625 
End bp415635 
Gene Length1011 bp 
Protein Length336 aa 
Translation table11 
GC content55% 
IMG OID642735825 
Productcytochrome D ubiquinol oxidase subunit II 
Protein accessionYP_002039599 
Protein GI194443076 
COG category[C] Energy production and conversion 
COG ID[COG1294] Cytochrome bd-type quinol oxidase, subunit 2 
TIGRFAM ID[TIGR00203] cytochrome d oxidase, subunit II (cydB) 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value0.0000000000000259271 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGACCATCG ATCTTCCGGT TATCTGGTTT GCTATTATCG TGTTCGCCAC GCTGATGTAT 
ATCGTGATGG ATGGGTTCGA TCTGGGCGTC GGTATCCTGT TTCCGTTTAT TCGTGATAAA
CACGATCGCG ATGTTATGGT GAACTCGGTC GCGCCGGTAT GGGACGGGAA CGAAACCTGG
CTGGTGCTGG GCGGGGCCGG GCTTTTTGGC GCGTTCCCGT TGGCTTATGC CGTCATCACC
GACGCGCTGA CTATCCCGCT GGTGGTTATG CTGCTTGGTC TTATCTTTCG CGGCGTCGCT
TTTGAATTCC GTTTTAAAGC CACCGAGTCG CATCGCGCGT TCTGGGATAA ATCCTTTATC
GTCGGGTCAA TCCTGGCGAC CTTTGCCCAG GGGGTTGTGG TGGGCGCGGT GGTGAGCGGT
TTTCAGGTGG AAGGGCGAAC CTTTAGCGGT TCGCAGCTTG ACTGGCTGAC GCCGTTTAAT
CTGTTCTGCG GTGTCGGTCT GGTTGTCACC TACGCGCTGC TGGGCGCTAC CTGGCTGATT
ATGAAAAGCG AAGATCCGCT GCATAGCCGG ATGTGCGCGC TGTCGCGCCC GTTGTTGATC
GTCTTGTTGC TGGTGATGGG AGGCGTCAGC GTGTGGACGC CGCTCACCCA CGACGACATC
GCCGAGCGCT GGTTCACGCT GCCCAATTTA TACTACTTCC TGCCGGTGCC TGTGCTGGTG
TTGGCTTTTA GCGTCTGGCT ATGGCGCAGC GTGAAAAAAC CAGAATCCCA TGCGCGTCCA
TTTATTCTCA CGCTAGGGCT GATTTTTCTG GGGTTCAGCG GGTTAGGCAT CAGTATTTGG
CCGAATATTA TTCCACCGGA TATTTCGCTG TATGCCGCCG CCGCGCCGCC GCAAAGTCAA
AGCTTTATGC TGGTTGGGGC GCTGATAATC ATCCCGATTA TTCTGGCTTA TACCTTCTGG
AGCTACTACG TCTTCCGTGG AAAAGTGCGA CATGGAGAGG GATATCACTG A
 
Protein sequence
MTIDLPVIWF AIIVFATLMY IVMDGFDLGV GILFPFIRDK HDRDVMVNSV APVWDGNETW 
LVLGGAGLFG AFPLAYAVIT DALTIPLVVM LLGLIFRGVA FEFRFKATES HRAFWDKSFI
VGSILATFAQ GVVVGAVVSG FQVEGRTFSG SQLDWLTPFN LFCGVGLVVT YALLGATWLI
MKSEDPLHSR MCALSRPLLI VLLLVMGGVS VWTPLTHDDI AERWFTLPNL YYFLPVPVLV
LAFSVWLWRS VKKPESHARP FILTLGLIFL GFSGLGISIW PNIIPPDISL YAAAAPPQSQ
SFMLVGALII IPIILAYTFW SYYVFRGKVR HGEGYH