Gene SNSL254_A0381 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSNSL254_A0381 
Symbol 
ID6483597 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Newport str. SL254 
KingdomBacteria 
Replicon accessionNC_011080 
Strand
Start bp390063 
End bp390797 
Gene Length735 bp 
Protein Length244 aa 
Translation table11 
GC content36% 
IMG OID642735806 
Productputative transmembrane regulator 
Protein accessionYP_002039580 
Protein GI194442584 
COG category[K] Transcription 
COG ID[COG3710] DNA-binding winged-HTH domains 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones52 
Fosmid unclonability p-value0.0344786 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAATGAAA GCATATTTTT ACTTGATAAG CGTGTTGTAT TTGATAGTAC GAAGATGACC 
TTATCGCATG GTAATGAGAT AATCAGAATA TCAGAAGCTG AGACCCATCT GCTTCTTGCT
TTTTGGCATG GTCTTTACAA AAAAGAAGAT ATTATTCATT TTGTTTGGGA AAATCGTGGA
GGCTGCGTCT CAGAATCTAG TTACTATAAA CTCATTAATC AAATGAGAAA TGATTTTAGT
AGCATTGGTC TACAGTCATC TGACATCGTA ACTCGCCCTC GGGTGGGGGT GTCGCTGTCT
GTTGCCATTG AACCTATAAA AAAAATCACC TCCCTAAAGG TGAGTGATGA AAACGTTAAA
GGCACCCTGA CTCGGGAGAA CATATTTTAC AAAATTAAAC GTCACAGCGT ATTTGTGGTA
TTAACAGGAG CCATTATTCT GGCATTGCTC TATGGTGTAT TTACTATATA TAAAGCGCCT
GTTCGTAACA GCCCTGATAG TTTTTTTACA TATCTTGGCG AATATAACGA TTATGCAATC
TATAAAACAA AAGAGGATAA GGTCACATTA AGTGAAGTAG TTTTTGCTTT TAACTCTCTA
AAAATTAAAA TTTACCGGCA AAATGGACGC CATCTTTATT ATATCAGGGA GCCAAATATG
AATATTTTTC TGCAATGCTT AAATCCTGTT GAAATGGCGG TGCCAAAATG TATTACAGTA
AAAGAACGTT ACTGA
 
Protein sequence
MNESIFLLDK RVVFDSTKMT LSHGNEIIRI SEAETHLLLA FWHGLYKKED IIHFVWENRG 
GCVSESSYYK LINQMRNDFS SIGLQSSDIV TRPRVGVSLS VAIEPIKKIT SLKVSDENVK
GTLTRENIFY KIKRHSVFVV LTGAIILALL YGVFTIYKAP VRNSPDSFFT YLGEYNDYAI
YKTKEDKVTL SEVVFAFNSL KIKIYRQNGR HLYYIREPNM NIFLQCLNPV EMAVPKCITV
KERY