Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SNSL254_A0381 |
Symbol | |
ID | 6483597 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salmonella enterica subsp. enterica serovar Newport str. SL254 |
Kingdom | Bacteria |
Replicon accession | NC_011080 |
Strand | + |
Start bp | 390063 |
End bp | 390797 |
Gene Length | 735 bp |
Protein Length | 244 aa |
Translation table | 11 |
GC content | 36% |
IMG OID | 642735806 |
Product | putative transmembrane regulator |
Protein accession | YP_002039580 |
Protein GI | 194442584 |
COG category | [K] Transcription |
COG ID | [COG3710] DNA-binding winged-HTH domains |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 52 |
Fosmid unclonability p-value | 0.0344786 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAATGAAA GCATATTTTT ACTTGATAAG CGTGTTGTAT TTGATAGTAC GAAGATGACC TTATCGCATG GTAATGAGAT AATCAGAATA TCAGAAGCTG AGACCCATCT GCTTCTTGCT TTTTGGCATG GTCTTTACAA AAAAGAAGAT ATTATTCATT TTGTTTGGGA AAATCGTGGA GGCTGCGTCT CAGAATCTAG TTACTATAAA CTCATTAATC AAATGAGAAA TGATTTTAGT AGCATTGGTC TACAGTCATC TGACATCGTA ACTCGCCCTC GGGTGGGGGT GTCGCTGTCT GTTGCCATTG AACCTATAAA AAAAATCACC TCCCTAAAGG TGAGTGATGA AAACGTTAAA GGCACCCTGA CTCGGGAGAA CATATTTTAC AAAATTAAAC GTCACAGCGT ATTTGTGGTA TTAACAGGAG CCATTATTCT GGCATTGCTC TATGGTGTAT TTACTATATA TAAAGCGCCT GTTCGTAACA GCCCTGATAG TTTTTTTACA TATCTTGGCG AATATAACGA TTATGCAATC TATAAAACAA AAGAGGATAA GGTCACATTA AGTGAAGTAG TTTTTGCTTT TAACTCTCTA AAAATTAAAA TTTACCGGCA AAATGGACGC CATCTTTATT ATATCAGGGA GCCAAATATG AATATTTTTC TGCAATGCTT AAATCCTGTT GAAATGGCGG TGCCAAAATG TATTACAGTA AAAGAACGTT ACTGA
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Protein sequence | MNESIFLLDK RVVFDSTKMT LSHGNEIIRI SEAETHLLLA FWHGLYKKED IIHFVWENRG GCVSESSYYK LINQMRNDFS SIGLQSSDIV TRPRVGVSLS VAIEPIKKIT SLKVSDENVK GTLTRENIFY KIKRHSVFVV LTGAIILALL YGVFTIYKAP VRNSPDSFFT YLGEYNDYAI YKTKEDKVTL SEVVFAFNSL KIKIYRQNGR HLYYIREPNM NIFLQCLNPV EMAVPKCITV KERY
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