| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SNSL254_A0311 |
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| Symbol | icmF |
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| ID | 6483970 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Salmonella enterica subsp. enterica serovar Newport str. SL254 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011080 |
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| Strand | + |
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| Start bp | 326040 |
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| End bp | 329909 |
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| Gene Length | 3870 bp |
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| Protein Length | 1289 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 642735744 |
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| Product | type VI secretion protein IcmF |
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| Protein accession | YP_002039519 |
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| Protein GI | 194442352 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3523] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR03348] type VI secretion protein IcmF |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 43 |
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| Fosmid unclonability p-value | 0.00685526 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCAAAAAT TTCTTAGTCT GCTTTTTTCC CGGCGCGCGC TGGCGGTTGT GGGCGTTCTG
GTTCTGGCGC TGCTGGTCTG GTTTGTCGGG CCACTGGTGT CATTTGATAC CCTGCGCCCG
CTGGCCTCCG TGGGTAGCCG GGTAGTGACC ATTGCCCTGT TACTGATGCT GCTGGTACTG
TGGCTGGTCA ACTGGTCGAT GAGTATCATC GGCATCAGTG TCCTGTGCCT GGCGATTGGC
TTCGTCACAC CGCTGCTGGC CCTGGGCGAT GTCCATCCGT TTGCACCGCT GTGGGTCCGC
CTGACATTAA TTGGTTTCAT CCTGCTGATG TACGCGCTGT ACGGCCTGTA CCGGCTGTGG
CGTGCGCTGC GTATGGATGA ACAACTGCTG CGTCGCTTCC TGCATCCGCG CGGGGAAGAG
GTACCGGTGG CAGGCGAGAT CAAAGCCGAC CTGCGCACCG TCAACCATAT TGTCACGCAG
GCCATCCGGC AGCTGCGGCA GTTGCGGGTG GATATGCCTG GCTGGCGTAA AATCTTCGAG
GGTAAACGCT TTCTGTATGA GCTGCCGTGG TTCATGGTGG TCGGCAGTCC CGGCGATGGC
AAAACCACGG CCCTGCTGAA CACCGGATTG CAGTTCCCGC TGGCGGAGCA AATGGAGCAG
ACCTCGCGCA TCCTGACAGT ACCGGGTGGC GGCACGCTAC ACTGCGACTG GTGGTTTACC
AACGAAGCGG TGTTGATTGA TACCGCCGGA CGCTACGCCC GCCACGATGA CGGCGGCGAA
GCGAGCGCCG CGCAGCGTAA CGCCGGAGAG TGGCAGGGCT TTCTCGGTCT GCTGCGTAAA
CATCGCCCCG GCGCGCCGCT TAACGGCGTG ATCCTGACGC TAAACGTGGC GGATTTAACC
GCACAGTCAC CGGCGGAACG CCTGGCGGCC TGCGCCGCTC TGCGGGCGCG ACTGGCAGAA
CTGCGCGAGA CCCTGGGGAT TCGCTTTCCG GTCTATCTGG TGGTCACCAA AATGGATTTG
TTGCCGGGGT TCAGCGAGTA TTTTCGCACG CTGACCAGCC ATCTTCGCGC ACAAATCTGG
GGCTTCACGT TGCCGTACAG CCGCAGGCGA AAAGCGGGCG ACCCGCAGGC GCTGCACGCC
GCCTGCGCGC AGGAGCTGGC GCGCCTGACG CTGCGGCTGG ATCAGGGACT GGATACCCGG
TTACAGGAAG AGTACGACCT TAAAAGCCGC CAGCGGCTGT ATACCTTCCC GCGTGAGTTC
GCCGCCCTCG GCGAGCCGTT GCTGGAGGCT ATTGAACAGA TCTTCCTCGA TTCAAAATTC
GATGCCACGC AACTGAATAA CACGCTGCGC GGGGTGTTTT TCACCAGCGC CGCGCAGGCG
CAGGCCGACG CCGTGGCCGA CCAGTTGAGT ATCTGGCAGC GCTTTGTCCG GGCGATAAAA
ACCGCCCGTG GCGAATCCTC CGCCTCTCTC CCGCACGCTC TGCCGGACGG CAACCGCAGC
TACTTTCTGC ATGACCTGCT GACACAGTTT ATTTTCCGTG AAGCGCACCT GGTGGAGCCA
AACCTCCAGT GGGCCTGGCG TTACCGCCTG CTGCGCCTCG GCGGGCACCT GCTGGTACTG
GTGCTGGCAT TCCTGTTGTG GCAGGGGATG CAGACCAGCC AGCAGACCAA CGGCGACTAT
CTGAATGAAA TCAGCGCCCG CGCGACCCGG CTGGACGGCG AGGTGAAAGC CTACACCGGT
AAACCGGCGA TGGCTCCCGT CCCGGCACTG CTGGACAGCG CAAGGGAACT GTCCGCCTGG
CCGGAACTGG ACCCGGACGC GCCGCCGCTG ACCTGGCGCT ACGGCCTGTA CAGCGTACCG
CCGGTAACCG ACAGCGTGGC GTCGCTGTAC AACCGCCTGC TGGATCAACT GCTGCTGCCG
CCGCTGGTGA AACGGATGGA GTATGTGCTG GCGGACGCCA TTGCCCGTCA GGACAGTAAA
GCTGCGTATG ATGCCCTGCG CATCTATCTG CTACTGAATC TGGATAAAGA TCACGAAGAT
AAATACAACG CGGCGGAGAT CCAGTCGTGG GTGATTAACG AGCTGGGGAA CAGCGACAGC
GTGGCCGGGT TTGGCGGGCG CGCCGCCGTG CTGACGCATA TCGAAGCGCT GTTTGACGGC
AGCCGGGTGG TGCATTCACC GTATGAGAAA AATGAGGCGC TGATCCGTCA GGCGCGGGCA
TTCCTCGACG GTCACACCAG TACCGAGCGT ATCTATGCGC GGGCGCTGGC GGCGATGGAG
AGCGAAGCGC CGCAGGAGTT CACGCTGGTA CGCGCCGTCG GCGCGGATGC GGGAACGGTG
TTTGTGCGTA GCAACGGCGC GCCGTTGGAT CGGGGCGTGC CGGGTATTTT TACCCGTGAA
GGTTACCGGG AGCTGTTCGA CAAACGATTA CCGGAATTTG TGGCGGCGGC GACGGCGAAC
GATGGCTGGG TGATGGGCCG GGAGAGTACG CCAAAAAAGC TGACTGACAG CCTGCGCAGC
CAGATACCGA GGCAGGAGCA GTCTGTCGCC CGCGAAGTCC GCCGTTTGTA CCTGACAGAA
TATGCCCGCC GCTGGCAGGA TTTTCTGGAC AGTATCCATA GTATCAACAG TGCCGGGGAA
GAGGGCAGTT CCGGCCTGGC CTATGATTTA CAGGTGCTGC GCACCCTGGC GTCGCCGGAC
TCACCGCTGA TGCGGCTGGG AAAAGCGGTG GTGGAGCAGA CCACGCTGGT GCCGCCGCCG
GACCCGCAGG CCAGACAGAA ACAACTGGCG CAGCGCGCAT CCGGTAACGC GGGGAAAGTG
GTACAGACGG CAAAACTGTT CCAGGATATT CACCCGGAAG AGCGGCTGGA AAAAACGCTG
GTGGATGACC GTTTCGCCGC GCTGCGCGAG GTCATTGCCG GGCGGGCGGA CGGCGGACAG
AGCGGTGGTG GGACGATGCA GATCGCTTCG CTGCTGACCA TGCTCAACGA GTATTACACC
CAACTGACCA TTGCTGATAG CGCGCTGGCG GCGGGGACGT TGCCAGCGCG CATTACTGCC
GCAGACAAGT TGCAACTGGA GGCGGCGAAA CTGCCTGCGC CGCTGAAAAA CATCCTGCTG
GATCTGACGA AGCAGGGAAC GCGCAAAATC AACGCCGGGA CCGGCGACGT GCTGAACACC
CAGATGGAGG CGATGATGGG CGACGACTGC CGTGACGCCA TCGACGGGCG CTATCCGTTC
GCCGACAGTC CGCAGGAGGT CGGCGCCGAG GACTTTAACC GCATCTTCGC CAGCGGCGGC
GTACTGGATG CTTTCTGGAG CAAACAACTG GCTCCGCTGG CGGACACCGC CAGCGACCCG
TGGCGCTACA AACCAACCGA AGGCAACATG ACATTGCAGG GGCCGGATCT GACGCCGTTT
CAGCAGGCGA AGCAGATCCG CAGCGTGTTT TTTAACAGCG AGGGCGGGAA AAAATTTTCC
TGGTCGATGC AGATTAGCGT GGTGGATATG GACCCGGCCA TCACGGAACT GGTGATTGAT
ATCGACGGTC AGGTGCTGCG CTACGCCCAT GGTCCGGACC GGCCCCTGAA AGTGACGTGG
CCGGGACCGC GCAACGGCTC GATGGCGGAA ATCACCGCCA GCCCGCGTAT TCGCCAGGAC
ACCTCAACGC TACTGACCGG CGGGCCGTGG GCGCTGTTTC ATCTGCTGGA CGCCGGAATG
GTGCAGGAAA CGGCGGTGCG GGGGCGTCAA CTGGTGGAAT ATGATTTTGA CGGTCGCCGG
GTGGTGCTGG AAATCACCGC CGGGCGGGAT TTTAACCCGG TCAGCCGGGA GCTGTTGCAG
AACTTCAGTT GTCCGGCGAG GGCGTTGTAA
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| Protein sequence | MQKFLSLLFS RRALAVVGVL VLALLVWFVG PLVSFDTLRP LASVGSRVVT IALLLMLLVL
WLVNWSMSII GISVLCLAIG FVTPLLALGD VHPFAPLWVR LTLIGFILLM YALYGLYRLW
RALRMDEQLL RRFLHPRGEE VPVAGEIKAD LRTVNHIVTQ AIRQLRQLRV DMPGWRKIFE
GKRFLYELPW FMVVGSPGDG KTTALLNTGL QFPLAEQMEQ TSRILTVPGG GTLHCDWWFT
NEAVLIDTAG RYARHDDGGE ASAAQRNAGE WQGFLGLLRK HRPGAPLNGV ILTLNVADLT
AQSPAERLAA CAALRARLAE LRETLGIRFP VYLVVTKMDL LPGFSEYFRT LTSHLRAQIW
GFTLPYSRRR KAGDPQALHA ACAQELARLT LRLDQGLDTR LQEEYDLKSR QRLYTFPREF
AALGEPLLEA IEQIFLDSKF DATQLNNTLR GVFFTSAAQA QADAVADQLS IWQRFVRAIK
TARGESSASL PHALPDGNRS YFLHDLLTQF IFREAHLVEP NLQWAWRYRL LRLGGHLLVL
VLAFLLWQGM QTSQQTNGDY LNEISARATR LDGEVKAYTG KPAMAPVPAL LDSARELSAW
PELDPDAPPL TWRYGLYSVP PVTDSVASLY NRLLDQLLLP PLVKRMEYVL ADAIARQDSK
AAYDALRIYL LLNLDKDHED KYNAAEIQSW VINELGNSDS VAGFGGRAAV LTHIEALFDG
SRVVHSPYEK NEALIRQARA FLDGHTSTER IYARALAAME SEAPQEFTLV RAVGADAGTV
FVRSNGAPLD RGVPGIFTRE GYRELFDKRL PEFVAAATAN DGWVMGREST PKKLTDSLRS
QIPRQEQSVA REVRRLYLTE YARRWQDFLD SIHSINSAGE EGSSGLAYDL QVLRTLASPD
SPLMRLGKAV VEQTTLVPPP DPQARQKQLA QRASGNAGKV VQTAKLFQDI HPEERLEKTL
VDDRFAALRE VIAGRADGGQ SGGGTMQIAS LLTMLNEYYT QLTIADSALA AGTLPARITA
ADKLQLEAAK LPAPLKNILL DLTKQGTRKI NAGTGDVLNT QMEAMMGDDC RDAIDGRYPF
ADSPQEVGAE DFNRIFASGG VLDAFWSKQL APLADTASDP WRYKPTEGNM TLQGPDLTPF
QQAKQIRSVF FNSEGGKKFS WSMQISVVDM DPAITELVID IDGQVLRYAH GPDRPLKVTW
PGPRNGSMAE ITASPRIRQD TSTLLTGGPW ALFHLLDAGM VQETAVRGRQ LVEYDFDGRR
VVLEITAGRD FNPVSRELLQ NFSCPARAL
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