| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SNSL254_A0307 |
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| Symbol | |
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| ID | 6486662 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Salmonella enterica subsp. enterica serovar Newport str. SL254 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011080 |
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| Strand | + |
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| Start bp | 321951 |
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| End bp | 323294 |
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| Gene Length | 1344 bp |
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| Protein Length | 447 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 642735740 |
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| Product | type VI secretion protein |
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| Protein accession | YP_002039515 |
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| Protein GI | 194444887 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3522] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR03353] type VI secretion protein, VC_A0114 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.300554 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 53 |
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| Fosmid unclonability p-value | 0.0525484 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCTGGA ATGACCGCGT AGTCTGGAGT GAAGGACAAT TTTTACTGCC GCAGATGTTT
CAGCAGCAAG AGCGTTATCT GGAACACGTC ATGCATTACC GCAGCCTGCC GCTGACCCCC
TTTTTCTGGG GATTCAGCCA CTACAATATT GATGGCGAAG CGCTGAACAT CGGTAAACTG
ATACTGAAAG AGGCATCAGG GATTTTCCCT GACGGCACGC CGTTTAACGC ACCGGACCAC
ACCCCGCTGC CGCCGCCGCT GACCATCCTG CCGGAGCACC TGAACCAGCA GATTTGTCTG
GCGGTACCGG TTCGCGCGCC GAACAGCGAA GAAACTACGT TTGACAATAA CCCGGAATCA
CTGGCGCGTT TCTCGGTACA TGAACACGAC ATCCGCGACG CCAACTCGCT GGGACGTGGC
GCGCAGTTAT TACAGCTCAG TCACCTGCGC CTGCGGCTGC TGCCGGAAAA AGCGGTGACG
GGCGCCTGGA TTGGCCTGCC GTTGACCCGC ATCACCGGGT TGAACCCTGA CGGGCGGATA
GATATCGACC ACGACCTGAT CCCGCCCATC ATTAATTATC AGGCCAGTTC ACTGATGTGT
ACCTGGCTGT CGTGGATCAA CGATCTCATC CGGATGCGGG CCGATTCGCT GGCGGAACGG
CTGACAGGCA GCGACAACCA CGGCCATGAA GCAGCGGAGG TCTCCGATTA CCTGCTGCTG
CAAATTCTCA ATCGCTTTGA GCCGCTGTTG ACCCACCTGG CGAAAACGCC GCTGGCCCCG
GAAGTGTTGT ATCGCTACCT GTCCGAACTG GCCGGGGAAC TCTCCACCTA TGTGCGTCCA
CAAACGCGAC GGCCCGCTGA ATACAAAGAG TACAAACACC TGACGCCCTA TGCCGGGTTG
AAATCGCTGG TTGATGAGGT GCAGTTCCTG CTGAATGCGG TACTGATCCG GGGCGCGCAG
CGCATCGAAC TGAAAGAGGG GACTTACGGC ATCCTGAATG CGGTGGTGGC TCCTTCCGAT
CTTGCCGATT TCAGCACGCT GGTACTGGCG ATAAAGGCTT CAATGCCGAC CGATGTGCTA
CTGCAACATT TTGCCGCCCA GACCAAAATC GGGCCATCCG ATCGCCTGCC GGAACTGATC
CGCTCGCATC TGCCGGGGCT GGCTTTGCAG GTTCTGCCTG TACCACCGCG CCAAATCCCG
TTTCAGGCCG GATACATCTA TTACGACATC CGCCGCGAGG GAGCATTGTG GGAACACATT
GCCCGTTACG GCGGGATGGC CATGCATACC GCCGGGGAAT TTCCGGGGCT GGAGACAGAA
CTGTGGGGAG TGCGCGATAA ATGA
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| Protein sequence | MSWNDRVVWS EGQFLLPQMF QQQERYLEHV MHYRSLPLTP FFWGFSHYNI DGEALNIGKL
ILKEASGIFP DGTPFNAPDH TPLPPPLTIL PEHLNQQICL AVPVRAPNSE ETTFDNNPES
LARFSVHEHD IRDANSLGRG AQLLQLSHLR LRLLPEKAVT GAWIGLPLTR ITGLNPDGRI
DIDHDLIPPI INYQASSLMC TWLSWINDLI RMRADSLAER LTGSDNHGHE AAEVSDYLLL
QILNRFEPLL THLAKTPLAP EVLYRYLSEL AGELSTYVRP QTRRPAEYKE YKHLTPYAGL
KSLVDEVQFL LNAVLIRGAQ RIELKEGTYG ILNAVVAPSD LADFSTLVLA IKASMPTDVL
LQHFAAQTKI GPSDRLPELI RSHLPGLALQ VLPVPPRQIP FQAGYIYYDI RREGALWEHI
ARYGGMAMHT AGEFPGLETE LWGVRDK
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