Gene SNSL254_A0191 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSNSL254_A0191 
Symbol 
ID6485750 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSalmonella enterica subsp. enterica serovar Newport str. SL254 
KingdomBacteria 
Replicon accessionNC_011080 
Strand
Start bp207231 
End bp209777 
Gene Length2547 bp 
Protein Length848 aa 
Translation table11 
GC content55% 
IMG OID642735628 
Productouter membrane usher protein FimD 
Protein accessionYP_002039410 
Protein GI194446310 
COG category[N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG3188] P pilus assembly protein, porin PapC 
TIGRFAM ID[TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones85 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGCAAAA GGCAACACCG GGTATTTTAT TTATCGCGCT GCGCTGTGTG TATCGCGCTG 
GGCAGCACGT TCGCACACGT TGCATGGGCG CGCGACTATT TCAATCCGGC ATTTATTGAA
AACCATGGGC AGGCGAGTCG CACAAGCGTC GATCTGTCGA CATTTGATAA CGACAAAAGC
CAGCTGCCAG GCACCTATTA CGTCACTATC AATATCAATA AAACAGAAAT CGGCGCGCGA
AACGTTGATT TTCAACTCAC GACGCTCAGT GACGGTCAAC AGGCATTACA GGGCTGTTTA
CGGCTCCAGG AACTAAAAGA TAACGGCGTC AAAACCGACC TTTTTCCAAC GCTGGAGAGT
GAAAAAGGCT GCGTCGATCT CAGCGTTATC CCCGGCGCCA GCCAGCGGTT TGATTTTCAG
CAACAGGCAT TATCAGTAAG CATCCCGCAA CTCTACATCG CCAACAACGC ACGCGGCTAC
GTACCGCCGG AAAAGTGGCA GGAGGGGATT ACCGCGCTGA TGCTGAACTA CAGCTTCAGC
GGCTATAAAG AGTACGGTTC CAGTGAGGAT TCCGACGATG CGGAATCGAA GTATCTCGCT
CTCCAGCCGG GTTTTAACCT CGGGCCGTGG CGTTTTCGCA ACTACAGTAA CTGGAGTTCA
AATAACGGCG AGAGCGGTAG CTGGAACAGC GTTTATAACT ATTTACAGCG CGACATTATC
GCGCTGAAAA GCCAGTTCAC CGCCGGAGAC AGCAATACGC CATCCGACGT GTTCGACAGC
GTACCTTTTC GCGGCCTCCA GCTCACCTCT GACGATCAAA TGCAGCCCAA CAGCCAGCGT
GGTTACGCCC CGACGATTCG CGGCATCGCC CGCTCAAACG CGCAGGTTAT CGTGCGGCAA
AACGGCTATA TCGCCTATCA GACCGCCGTT TCGCCGGGCG AATTTGAAAT CAACGATATG
TTTCCCACCG GCAGCAACGG CGACTATGAC GTGACGGTAA AAGAAACCGA CGGCAGCGAA
CAGCACTTTA TCGTGCCCTA CTCTTCGCTG CCGATTCTGC AGCGCACCGG ACGGGCAAAA
TACAGCGTGA CCGTGGGTAA ATATCGCGAT TATAACAACC ACACGCTGGA CGACTTCGGC
CAGGCGACCT TGCTGTACGG CCTGCCGTGG GGCATCACCC TGTACGGCGG CAGCCAGATT
GCCGGCGATA AATACCAGTC CGTCGCCTTC GGCGTCGGGC AAAATATGCA GATGCTGGGG
GCCATTTCCC TGGACGGCAT CTGGTCGCAC GCCAAATTTG ACGATGGCCG CAAAGAAATC
GGGCAATCCT GGCGCGTCCG CTACAGCAAG GGCGTCGTCA GTACGGGCAC CACGTTTTCG
CTGGCCGGCT ATCGTTACGC CAGCGAAAAC TACAATTCGC TGAGCGAGGT GATCAACCCG
GACGACGATT TTTATGATAA CTACGGCAAG CGCCATAATC GTTTCGAAGC TTCGGTCAAC
CAGCAAATTA GCAATACGCT CGGTTCCTTA ACGCTAAGTT GGGTCAAAGA AGATTACTGG
CACAGCGCGC AGCAGATGGA ATCCCTGAGC GCCAGCTACA ACAATAGCTG GGGTCCGGTG
AGCTATACGC TGAGCTACAG CTATAACAAA AACACCTACC AGTACCGTTC GGGCAATGAC
GATGATGACA ACGACGACGA TCGTTATAAC CAGAACGATC GGCTGTTCAC GCTGTCGCTG
CACGTTCCGT TTACGGTGTT CGATTCCAGG CTATACGCCA GCTATATGCT GAACACGCGT
AAGCACGATG CCACGGTGAA CAGCACCACC CTTAGCGGCA CCGCGCTGCG TGACAGAAAC
CTGAACTGGT CGTTACAGCA AAGCCACAGC ACACAAGACG GTGATTCCGG CGGGGTAAAC
GCCAGCTATA AAGGCACTTA TGCCAACCTC AACGCCGGTT ACAATCAGTC GCCAGATAGC
CAACAGGTCA GCTACGGCAT CAGCGGCGGC ATTCTGGCGC ACGAAAACGG TATTACCCTG
AGCCAGCCGA TTACCGGCGC GGCGATTTTA ATTAAAGCGC CCGGCGCCAG CGGCGTTTCG
GTTGAAAACC AGACCGGCGT CGCCACCGAC TTCCGGGGTT ATACGGTGAT CCCCAACGTC
ACGCCGTATT ATCGCTACGA TATCTCGCTC GACAGCAGCA CGTTTGCTGA CAACGTGGAT
ATTCCGCTCA ACAACCAGAC CGTCTACCCG ACGCGTAATG CGGTGGTGCG CGCGGCGTAT
GACACGCATA AGGGCTATCG CGTGTTGTTA ACGCTGACGC GCAGCAATGG CGAGCCCGTG
CCCTTTGGCG CGACGGCAAG CGTCGATGGG CAGGATGCGA ACCTGGCCAG TATCGTCGGC
GATAAAGGCC AGGTCTTCCT CAGCGGCCTG CCGGAAGAGG GCCTGCTGCT GGTGAACTGG
GGAAGCGCCT CTTGCCGCAC GGATTACCGC CTGGATATCA GCAAAAATAT GAACGGCATA
GTGATGGCGA ACGCCGTCTG CCAGTGA
 
Protein sequence
MRKRQHRVFY LSRCAVCIAL GSTFAHVAWA RDYFNPAFIE NHGQASRTSV DLSTFDNDKS 
QLPGTYYVTI NINKTEIGAR NVDFQLTTLS DGQQALQGCL RLQELKDNGV KTDLFPTLES
EKGCVDLSVI PGASQRFDFQ QQALSVSIPQ LYIANNARGY VPPEKWQEGI TALMLNYSFS
GYKEYGSSED SDDAESKYLA LQPGFNLGPW RFRNYSNWSS NNGESGSWNS VYNYLQRDII
ALKSQFTAGD SNTPSDVFDS VPFRGLQLTS DDQMQPNSQR GYAPTIRGIA RSNAQVIVRQ
NGYIAYQTAV SPGEFEINDM FPTGSNGDYD VTVKETDGSE QHFIVPYSSL PILQRTGRAK
YSVTVGKYRD YNNHTLDDFG QATLLYGLPW GITLYGGSQI AGDKYQSVAF GVGQNMQMLG
AISLDGIWSH AKFDDGRKEI GQSWRVRYSK GVVSTGTTFS LAGYRYASEN YNSLSEVINP
DDDFYDNYGK RHNRFEASVN QQISNTLGSL TLSWVKEDYW HSAQQMESLS ASYNNSWGPV
SYTLSYSYNK NTYQYRSGND DDDNDDDRYN QNDRLFTLSL HVPFTVFDSR LYASYMLNTR
KHDATVNSTT LSGTALRDRN LNWSLQQSHS TQDGDSGGVN ASYKGTYANL NAGYNQSPDS
QQVSYGISGG ILAHENGITL SQPITGAAIL IKAPGASGVS VENQTGVATD FRGYTVIPNV
TPYYRYDISL DSSTFADNVD IPLNNQTVYP TRNAVVRAAY DTHKGYRVLL TLTRSNGEPV
PFGATASVDG QDANLASIVG DKGQVFLSGL PEEGLLLVNW GSASCRTDYR LDISKNMNGI
VMANAVCQ