| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SNSL254_A0185 |
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| Symbol | gcd |
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| ID | 6483601 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Salmonella enterica subsp. enterica serovar Newport str. SL254 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011080 |
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| Strand | - |
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| Start bp | 200372 |
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| End bp | 202615 |
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| Gene Length | 2244 bp |
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| Protein Length | 747 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 642735622 |
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| Product | quinoprotein glucose dehydrogenase |
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| Protein accession | YP_002039404 |
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| Protein GI | 194444817 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG4993] Glucose dehydrogenase |
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| TIGRFAM ID | [TIGR03074] membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.266992 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 97 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTGGTTG TGGCCGGATT GCTATGGCGC AGTAAACGTG CCGCACTGTG GCTGTATGCC
GCCCTGCTGC TGGCGACAAT GATTTGGGGC GTGTGGGAAG TCGGGTTCGA CTTCTGGGCG
CTCACGCCGC GTAGCGATAT TCTGGTGTTT TTCGGCATCT GGCTAATATT GCCGTTTGTC
TGGCATCGGC TGGTGGTTCC TTCCAGCGGC GCAGTGGCGG CGCTGGTCGT GGCGCTGCTG
ATTAGCGGCG GCATTCTGAC CTGGGCTGGC TTCAACGACC CGCAGGAGAT CAACGGTACG
CTTCGCGCCG ACGCCACGCC CGCCGCAACA AGCTCGTCGA TCGCCGACGA AGACTGGCCG
GCCTATGGAC GCAATCAGGA AGGCCAACGC TATTCACCGC TGAAACAGAT CACTGCGGAT
AACGTTCACC AACTGAAAGA AGCGTGGGTC TTCCGCACCG GCGATCTGAA ACAACCCAAC
GATCCGGGTG AAATCACCAA CGAAGTGACC CCGATTAAAG TCGGCGATAC GCTTTATCTG
TGTACGGCTC ACCAGCGTCT GTTCGCGCTG GACGCCGCCA GCGGTAAAGA GAAGTGGCAT
TTTGATCCTC AGTTGAAGAC CGATTCGTCT TTCCAGCATG TGACCTGCCG CGGCGTCTCT
TATCATGAGG CCAAAGCGGA TACCGCCTCG CCGGAGGTCA TCGCCGACTG TCCGCGCCGT
ATTATCCTCC CGGTCAACGA CGGTCGCCTT TTCGCGGTGA ATGCCGAAAC CGGCAAGCTG
TGTGAAACCT TCGCCAACAA AGGCGTCCTG AATCTGCAAA CCAATATGCC GGATACCACG
CCGGGACTGT ATGAACCGAC GTCGCCGCCG ATTATCACCG ATAAAACAAT TGTCATTGCC
GGTTCGGTCA CGGATAACTT CTCTACCCGC GAAACGTCCG GCGTTATCCG TGGTTTTGAT
GTTAATAGCG GTAAACTCAT GTGGGCCTTC GATCCGGGAG CGAAAGATCC GAACGCGATT
CCAGCCGATG AGCACGCTTT TACCTTTAAC TCGCCGAACT CCTGGGCGCC TGCCGCCTAT
GATGCGAAAC TGGATCTGGT CTATCTGCCG ATGGGCGTGA CCACGCCGGA TATCTGGGGC
GGTAACCGCA CGCCGGAGCA GGAACGTTAT GCCAGCTCCA TCCTGGCGCT GAATGCCACC
ACCGGGAAAC TGGCCTGGAG TTATCAGACC GTCCATCACG ATCTGTGGGA TATGGACCTG
CCGGCACAGC CGACGCTGGC GGATATTACC GTTGACGGTA CTACCGTTCC GGTTATCTAT
GCGCCAGCGA AAACCGGTAA TATCTTTGTG CTGGACAGAC GTAATGGCGA GCTGGTCGTG
CCCGCCCCGG AAAAACCGGT CCCGCAGGGC GCGGCAAAAG GCGATTACGT CGCCAAAACT
CAGCCGTTCT CTGATTTAAC CTTCCGCCCG AAAAAAGATC TCTCCGGCGC GGATATGTGG
GGCGCGACCA TGTTCGACCA ACTGGTGTGC CGCGTCATGT TCCACCAGTT GCGCTATGAA
GGTATCTTCA CCCCGCCGTC CGAGCAGGGA ACATTGGTAT TCCCTGGCAA CCTGGGGATG
TTTGAATGGG GCGGTATTTC CGTCGATCCA GACCGTCAGG TCGCTATCGC TAACCCGATG
GCGCTGCCGT TTGTCTCGAA GCTGATCCCA CGCGGCCCGG GTAATCCGAT GGAGCCGCCG
AAAGACGCGA AAGGTACCGG TACAGAAGCG GGTATTCAGC CACAGTACGG CGTACCATTC
GGCGTCACGC TGAATCCGTT CCTTTCGCCG TTTGGCCTGC CGTGTAAACA ACCGGCCTGG
GGCTATATTT CCGCGTTGGA TCTGAAGACC AATGAAATCG TGTGGAAGAA ACGTATAGGG
ACGCCGCGCG ACAGTATGCC GTTCCCGATG CCGGTTCCGG TGCCGTTCAA CATGGGGATG
CCCATGCTGG GCGGGCCAAT CTCAACCGCC GGTAACGTGC TGTTTATCGC CGCGACCGCC
GACAACTACC TGCGCGCTTA TAACATGAGC AACGGGGAAA AACTGTGGCA GGGACGTTTA
CCCGCCGGAG GCCAGGCAAC GCCGATGACC TATGAGGTAA ACGGTAAGCA GTACGTGGTC
GTTTCTGCCG GAGGCCACGG TTCGTTTGGT ACGAAGATGG GCGACTATAT CGTGGCCTAT
GCTTTGCCTG ACGACGCGAA ATAA
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| Protein sequence | MLVVAGLLWR SKRAALWLYA ALLLATMIWG VWEVGFDFWA LTPRSDILVF FGIWLILPFV
WHRLVVPSSG AVAALVVALL ISGGILTWAG FNDPQEINGT LRADATPAAT SSSIADEDWP
AYGRNQEGQR YSPLKQITAD NVHQLKEAWV FRTGDLKQPN DPGEITNEVT PIKVGDTLYL
CTAHQRLFAL DAASGKEKWH FDPQLKTDSS FQHVTCRGVS YHEAKADTAS PEVIADCPRR
IILPVNDGRL FAVNAETGKL CETFANKGVL NLQTNMPDTT PGLYEPTSPP IITDKTIVIA
GSVTDNFSTR ETSGVIRGFD VNSGKLMWAF DPGAKDPNAI PADEHAFTFN SPNSWAPAAY
DAKLDLVYLP MGVTTPDIWG GNRTPEQERY ASSILALNAT TGKLAWSYQT VHHDLWDMDL
PAQPTLADIT VDGTTVPVIY APAKTGNIFV LDRRNGELVV PAPEKPVPQG AAKGDYVAKT
QPFSDLTFRP KKDLSGADMW GATMFDQLVC RVMFHQLRYE GIFTPPSEQG TLVFPGNLGM
FEWGGISVDP DRQVAIANPM ALPFVSKLIP RGPGNPMEPP KDAKGTGTEA GIQPQYGVPF
GVTLNPFLSP FGLPCKQPAW GYISALDLKT NEIVWKKRIG TPRDSMPFPM PVPVPFNMGM
PMLGGPISTA GNVLFIAATA DNYLRAYNMS NGEKLWQGRL PAGGQATPMT YEVNGKQYVV
VSAGGHGSFG TKMGDYIVAY ALPDDAK
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