| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SNSL254_A0102 |
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| Symbol | rapA |
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| ID | 6483324 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Salmonella enterica subsp. enterica serovar Newport str. SL254 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011080 |
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| Strand | - |
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| Start bp | 109968 |
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| End bp | 112874 |
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| Gene Length | 2907 bp |
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| Protein Length | 968 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 642735545 |
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| Product | ATP-dependent helicase HepA |
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| Protein accession | YP_002039327 |
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| Protein GI | 194446131 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG0553] Superfamily II DNA/RNA helicases, SNF2 family |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.0648061 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 53 |
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| Fosmid unclonability p-value | 0.111163 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCTTTTA CACTTGGTCA ACGCTGGATC AGCGATACAG AAAGCGAGCT GGGACTTGGA
ACCGTTGTTG CGATGGATGC GCGAACCGTC ACCTTACTTT TCCCGTCCAC GGGGGAAAAC
CGCCTGTATG CGCGCAGTGA TTCTCCCGTG ACCCGCGTCA TGTTCAACCC TGGCGATACG
ATTACAAGCC ATGAAGGCTG GCAGCTACAT ATCGATGAAG TAAAAGAAGA AAATGGCCTG
CTTGTTTATG TCGGCACCCG CCTGGATACC GAAGAGACCA ATGTGACGTT GCGCGAGGTT
CTGCTCGACA GCAAGTTGGT TTTCAGTAAG CCCCAGGATC GTCTGTTCGC CGGTCAAATC
GATCGAATGG ATCGGTTCGC GCTGCGCTAT CGCGCCCGTA AATTTCAGAG CGAGCAGTAC
CGGATGCCAT ACAGCGGCCT GCGCGGTCAG CGGACCAATC TGATCCCGCA TCAGCTTAAT
ATCGCTCATG ATGTAGGTCG TCGCCACGCG CCGCGCGTAC TGCTGGCGGA TGAAGTGGGC
TTAGGTAAAA CCATTGAAGC CGGGATGATT CTGCATCAAC AGTTATTATC CGGCGCGGCG
GAACGCGTAT TGATCATCGT TCCGGAAACC CTGCAACACC AGTGGCTGGT AGAAATGCTG
CGCCGTTTCA ACCTGCGCTT CGCGCTGTTC GATGACGAAC GCTATACCGA AGCGCAGCAC
GACGCGTATA ACCCGTTTGA AACCGAACAA CTAGTGATCT GTTCGCTGGA TTTCGCCCGC
CGTAATAAGC AGCGTCTGGA ACATTTGTGC GACGCCGAGT GGGATTTGCT GGTGGTCGAC
GAAGCGCATC ATCTGGTGTG GAGTACCGAT GCGCCGAGCC GTGAATATAT GGCCATCGAA
CAATTAGCTG AACGCGTACC GGGCGTGCTG CTGCTGACCG CCACGCCAGA ACAGCTGGGG
ATGGAAAGCC ATTTCGCCCG TCTGCGCCTG CTCGATCCGA ACCGTTTCCA CGATTTCGAA
CAGTTTGTCG AAGAACAGAA AAACTACCGC CCTGTCGCCG ATGCGGTGGC CATGCTGCTG
GCGGGCAATA AACTCAGCAA CGACGAACTG AACAGGCTGG GCGATCTGAT CGGCGAACAG
GATATTGAAC CGCTGTTGCA GGCCGCTAAT AGCGATCGCG ACGATGCGCA GGCCGCCCGT
GATGAGCTGG TGTCGATGCT GATGGATCGC CACGGCACCA GCCGCGTTCT GTTCCGCAAC
ACCCGTAACG GCGTCAAGGG GTTCCCGAAA CGTGAACTGC ATACGGTAAA ACTGCCGCTG
CCGACCCAGT ATCAGACCGC CATTAAGGTC TCCGGCATTA TGGGCGCGCG TAAAAGCGCG
GAAGATCGCG CCCGCGATAT GCTCTATCCG GAACAAATTT ATCAGGAGTT CGAAGGCGAT
ACTGGCACCT GGTGGAACTT CGACCCACGC GTTGAGTGGC TAATGGGCTA TCTGACCAGC
CATCGTTCGC AAAAAGTGCT GGTGATCTGC GCCAAAGCGA CCACCGCGTT ACAGCTGGAG
CAGGTGCTGC GCGAACGCGA AGGCATCCGC GCCGCCGTGT TCCATGAGGG CATGTCGATT
ATCGAACGCG ACCGCGCCGC CGCCTGGTTC GCCGAAGAAG ATACCGGCGC GCAGGTGCTG
TTATGTTCCG AAATCGGCTC CGAAGGACGT AACTTCCAGT TTGCCAGCAA TCTGGTGATG
TTCGACTTGC CGTTTAACCC GGATCTGCTG GAACAGCGTA TTGGTCGTCT GGATCGTATC
GGCCAGGCGC ATGATATCCA GATCCACGTC CCGTACCTGG AAAAAACCGC CCAGTCGGTG
CTGGTTCGCT GGTATCACGA AGGGCTGGAC GCCTTTGAGC ACACCTGCCC AACCGGTCGC
GCGATTTATG ATTCAGCCTA CGCCAGTCTG ATTAACTATC TGGCCGCGCC TGAAGAAACC
GACGGGTTTG ACGATCTGAT CAAATCCTGC CGCGAGCAAC ATGAAGCGCT AAAAGCCCAG
TTAGAACAGG GCCGCGACCG CCTGCTGGAG ATCCACTCCA ACGGCGGAGA AAAAGCCCAA
CAGCTCGCAC AAAGCATTGA AGAACAGGAC GACGACACCA ACCTGATCGC GTTCGCCATG
AACCTGTTCG ATATTGTCGG CATTAACCAG GACGATCGCG GCGACAACCT GATCGTGCTG
ACGCCGTCCG ACCACATGTT GGTGCCGGAT TTCCCCGGCC TGCCGGAAGA CGGCTGTACT
ATCACGTTTG AACGTGACGT AGCCCTGTCT CGCGAAGATG CGCAGTTTAT TACCTGGGAA
CATCCGCTCA TCCGTAACGG ACTGGATCTG ATCCTCTCCG GCGATACCGG CAGCAGCACC
ATTTCGCTGT TGAAAAATAA AGCGCTGCCA GTCGGCACGC TGCTGGTCGA ACTGGTTTAC
GTCGTGGAAG CGCAGGCGCC GAAACAGCTA CAACTGAACC GCTTCCTGCC GCCGACGCCG
GTACGTATGC TGTTAGATAA AAACGGCAAC AATCTGGCCG CCCAGGTCGA GTTTGAAACC
TTCAACCGTC AGCTCAGCGC CGTGAATCGC CACACCGGCA GCAAACTGGT TAACGCCGTG
CAACAGGACG TCTATGCCAT TTTGCAACTG GGCGAGACGC AGATTGAACA GTCCGCCAGA
GCGCTGATTG ATAACGCGCG TCGCGAGGCG GATGAAAAAC TGTCCGGGGA ACTGTCGCGT
CTGGAAGCGC TGCGCGCCGT CAACCCGAAC ATTCGCGACG ACGAACTTGC CGCTATCGAC
AGCAACCGTC AGCAGGTGCT GGAAAGCCTG AATCAGGCAG GCTGGCGTCT GGACGCGCTG
CGTCTTATCG TCGTCACGCA CCAATAA
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| Protein sequence | MPFTLGQRWI SDTESELGLG TVVAMDARTV TLLFPSTGEN RLYARSDSPV TRVMFNPGDT
ITSHEGWQLH IDEVKEENGL LVYVGTRLDT EETNVTLREV LLDSKLVFSK PQDRLFAGQI
DRMDRFALRY RARKFQSEQY RMPYSGLRGQ RTNLIPHQLN IAHDVGRRHA PRVLLADEVG
LGKTIEAGMI LHQQLLSGAA ERVLIIVPET LQHQWLVEML RRFNLRFALF DDERYTEAQH
DAYNPFETEQ LVICSLDFAR RNKQRLEHLC DAEWDLLVVD EAHHLVWSTD APSREYMAIE
QLAERVPGVL LLTATPEQLG MESHFARLRL LDPNRFHDFE QFVEEQKNYR PVADAVAMLL
AGNKLSNDEL NRLGDLIGEQ DIEPLLQAAN SDRDDAQAAR DELVSMLMDR HGTSRVLFRN
TRNGVKGFPK RELHTVKLPL PTQYQTAIKV SGIMGARKSA EDRARDMLYP EQIYQEFEGD
TGTWWNFDPR VEWLMGYLTS HRSQKVLVIC AKATTALQLE QVLREREGIR AAVFHEGMSI
IERDRAAAWF AEEDTGAQVL LCSEIGSEGR NFQFASNLVM FDLPFNPDLL EQRIGRLDRI
GQAHDIQIHV PYLEKTAQSV LVRWYHEGLD AFEHTCPTGR AIYDSAYASL INYLAAPEET
DGFDDLIKSC REQHEALKAQ LEQGRDRLLE IHSNGGEKAQ QLAQSIEEQD DDTNLIAFAM
NLFDIVGINQ DDRGDNLIVL TPSDHMLVPD FPGLPEDGCT ITFERDVALS REDAQFITWE
HPLIRNGLDL ILSGDTGSST ISLLKNKALP VGTLLVELVY VVEAQAPKQL QLNRFLPPTP
VRMLLDKNGN NLAAQVEFET FNRQLSAVNR HTGSKLVNAV QQDVYAILQL GETQIEQSAR
ALIDNARREA DEKLSGELSR LEALRAVNPN IRDDELAAID SNRQQVLESL NQAGWRLDAL
RLIVVTHQ
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