Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SNSL254_A0078 |
Symbol | caiT |
ID | 6483400 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salmonella enterica subsp. enterica serovar Newport str. SL254 |
Kingdom | Bacteria |
Replicon accession | NC_011080 |
Strand | - |
Start bp | 86498 |
End bp | 88015 |
Gene Length | 1518 bp |
Protein Length | 505 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 642735521 |
Product | L-carnitine/gamma-butyrobetaine antiporter |
Protein accession | YP_002039303 |
Protein GI | 194445728 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG1292] Choline-glycine betaine transporter |
TIGRFAM ID | [TIGR00842] choline/carnitine/betaine transport |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.901874 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 70 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGAAAAATG AAAAGAAAAA ATCGGGAATT GAACCGAAGG TTTTTTTTCC GCCATTAATA ATTGTCGGGA TACTTTGCTG GCTAACAGTC AGAGATCTTG ATGCCGCTAA CGTCGTTATT AATGCGGTAT TCAGTTATGT CACCAACGTC TGGGGTTGGG CATTTGAATG GTATATGGTC GTCATGCTCT TCGGCTGGTT CTGGCTGGTT TTTGGCCCCT ATGCCAAAAA GAGATTAGGT GACGAAAAAC CGGAGTTTAG CACCGCCAGC TGGATTTTCA TGATGTTCGC CTCCTGTACA TCCGCTGCGG TTCTGTTCTG GGGCTCTATT GAGATCTACT ACTATATCTC CACCCCGCCG TTCGGCCTGG AACCAAATTC CACGGGCGCG AAAGAGATAG GCCTGGCGTA CAGCCTGTTC CACTGGGGGC CGCTGCCGTG GGCAACCTAT AGCTTCCTTT CCGTGGCCTT CGCCTACTTC TTCTTTGTAC GCAAGATGGA CGTCATCCGC CCCAGCTCCA CGCTGGTACC GCTCGTCGGT GAAAAGCATG CGAAAGGGTT GTTCGGTACC ATCGTCGATA ACTTCTACCT GGTGGCGCTG ATCTTCGCGA TGGGCACCAG CCTCGGTCTG GCTACCCCGC TGGTCACCGA GTGTATGCAA TGGCTGTTCG GTATTCCGCA TACGCTGCAA TTGGATGCCA TCATCATTAC CTGCTGGATC ATTCTGAACG CGATTTGCGT GGCCTGCGGC CTGCAAAAAG GGGTCAGAAT CGCCAGCGAT GTGCGTAGCT ACCTGAGCTT CCTGATGCTC GGCTGGGTGT TTATCGTCAG CGGCGCCAGC TTCATCATGA ACTACTTCAC CGACTCCGTC GGGATGCTGT TAATGCACCT GCCACGGATG CTGTTCTATA CCGACGCCAT CGGTAAAGGC GGCTTCCCGC AGGGCTGGAC CGTTTTCTAC TGGGCGTGGT GGGTTATTTA CGCCATCCAG ATGAGTATCT TCCTGGCCCG TATTTCCCGT GGTCGTACCG TACGTGAGCT GTGCTTCGGG ATGGTGATGG GTCTGACCGC GTCTACCTGG ATCCTGTGGA CAGTGCTGGG CAGCAACACG CTGCTGCTGA TGGATAAAAA CATCCTCAAC ATTCCGCAAC TGATTGAGCA ACACGGCGTG GCGCGCGCCA TTATCGAAAC CTGGGCCGCC TTGCCGCTCA GCACCGCCAC CATGTGGGGC TTCTTCATCC TCTGCTTTAT TGCCACCGTC ACGCTGATTA ACGCCTGCTC TTACACCCTG GCGATGTCGA CCTGTCGTGA AGTTCGCGAT GGTGAAGAGC CGCCTCTGTT AGTGCGTATC GGCTGGTCGG TGCTGGTCGG CATCATCGGT ATCGTTCTGC TGGCGCTGGG TGGGTTGAAA CCGATTCAGA CCGCGATTAT CGCCGGAGGA TGCCCGCTGT TCTTCGTCAA CATTATGGTG ACGCTGTCCT TTATTAAAGA CGCCAAAGTG CACTGGAAAG ACAAGTAA
|
Protein sequence | MKNEKKKSGI EPKVFFPPLI IVGILCWLTV RDLDAANVVI NAVFSYVTNV WGWAFEWYMV VMLFGWFWLV FGPYAKKRLG DEKPEFSTAS WIFMMFASCT SAAVLFWGSI EIYYYISTPP FGLEPNSTGA KEIGLAYSLF HWGPLPWATY SFLSVAFAYF FFVRKMDVIR PSSTLVPLVG EKHAKGLFGT IVDNFYLVAL IFAMGTSLGL ATPLVTECMQ WLFGIPHTLQ LDAIIITCWI ILNAICVACG LQKGVRIASD VRSYLSFLML GWVFIVSGAS FIMNYFTDSV GMLLMHLPRM LFYTDAIGKG GFPQGWTVFY WAWWVIYAIQ MSIFLARISR GRTVRELCFG MVMGLTASTW ILWTVLGSNT LLLMDKNILN IPQLIEQHGV ARAIIETWAA LPLSTATMWG FFILCFIATV TLINACSYTL AMSTCREVRD GEEPPLLVRI GWSVLVGIIG IVLLALGGLK PIQTAIIAGG CPLFFVNIMV TLSFIKDAKV HWKDK
|
| |