| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SNSL254_A0075 |
|---|
| Symbol | caiC |
|---|
| ID | 6485497 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salmonella enterica subsp. enterica serovar Newport str. SL254 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011080 |
|---|
| Strand | - |
|---|
| Start bp | 82376 |
|---|
| End bp | 83929 |
|---|
| Gene Length | 1554 bp |
|---|
| Protein Length | 517 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 642735518 |
|---|
| Product | putative crotonobetaine/carnitine-CoA ligase |
|---|
| Protein accession | YP_002039300 |
|---|
| Protein GI | 194443937 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG0318] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.672086 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 73 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGATATCG TTGGCGGACA AAACTTACGT CAGATGTGGG ACGACCTGGC CGGGGTGTAC
GGAGATAAAA CGGCGTTAAT TTTCGAATCC TGTGAGGGAA TCGTTCGGCA GTTTAGCTAT
GCTTCGATCA ATGAAGAGAT TAACCGCACG GCGAACCTTT TTTATTCCTT AGGGATCCGC
AAGGGTGATA GGGTCGCGCT GCATCTGGAT AACTGTCCGG AATTCATCTT TTGCTGGTTT
GGACTGGCAA AAATCGGCGC CATTATGGTG CCGATTAATG CCCGCTTACT GGGCGAAGAA
AGCGCCTGGA TCCTGCAAAA CAGCCAGGTG AGTCTGCTGG TTACCAGCGC CCAGTTTTAT
CCTATGTACC GTGAAATACG CCAGGACAAT AGCACTCCGC TTAATCATAT CTGTCTGATT
GGCGAGCAGC TTCCGGCTGA CGATGGCGTG AGCCACTTTT CCCAACTACA AGCACGCCAG
TCGGCCACGC TGTGCTATAC GCCCGCGTTA TCCACTGACG ATACGGCGGA AATTCTGTTT
ACCTCCGGTA CCACCTCGCG TCCAAAAGGG GTGGTGATTA CCCACTATAA CCTGCGCTTT
GCAGGCTATT ACTCTGCCTG GCAAATCGCC CTGCGCGATG ATGACGTGTA CATGACGGTG
ATGCCCGCTT TTCATATCGA CTGCCAGTGT ACCGCCGCAA TGCCAGCCTT TTCCGCCGGC
AGTACCTTTG TGCTCCTGGA GAAGTACAGC GCCAGGGCCT TCTGGGATCA GGTACGTAAA
TATCAGGCGA CGGTGACCGA GTGCATTCCT ATGATGATCC GCACGCTGAT GGTCCAGCCC
GCCGCACCAA CGGACAGGCA GCATCATCTG CGCGAAGTGA TGTTCTATCT CAATCTATCC
GCGCAAGAAA AAGACGCCTT TACCGAACGC TTTGGCGTCA GGCTGCTGAC CTCTTATGGT
ATGACTGAAA CCATTGTCGG AATTATTGGC GACCGTCCCG GAGACAAACG ACGCTGGCCT
TCCATTGGTC GCGTGGGTTT TAGCTATGAA GCTGAAATTC GCGACGATCA AAATCGCCCG
CTGCCCGCCG GAGAAATTGG CGAAATCTGT ATTAAAGGCA TCCCCGGCAA GACTATCTTC
AAAGAGTATT ACATGCAGCC GGAGGCAACC GCCAGGGCGC TGGAACCAGA GGGCTGGTTA
CATACCGGTG ATTCGGGTTA CCAGGATGAG GATGGCTATT TCTATTTTGT CGACAGACGC
TGCAACATGA TTAAACGCGG CGGGGAAAAT GTCTCCTGCG TCGAGCTGGA AAATATTATT
TCTGCGCATC CGAAAATTCA GGACATTGTG GTGGTTGGTA TTAAAGACGC GATCCGTGAT
GAGGCCATTA AAGCGTTTAT CGTCCTTAAT GAAGGTGAAA CATTAAGCGA AGCCGAGTTT
TTCAGCTTTT GCGAAAACAA TATGGCGAAA TTCAAGGTTC CCTCTTTTAT GGAGATCAGA
ACCGACCTGC CGCGCAACTG TTCAGGAAAA ATAATCAAAA AAAATCTGAA ATAA
|
|---|
| Protein sequence | MDIVGGQNLR QMWDDLAGVY GDKTALIFES CEGIVRQFSY ASINEEINRT ANLFYSLGIR
KGDRVALHLD NCPEFIFCWF GLAKIGAIMV PINARLLGEE SAWILQNSQV SLLVTSAQFY
PMYREIRQDN STPLNHICLI GEQLPADDGV SHFSQLQARQ SATLCYTPAL STDDTAEILF
TSGTTSRPKG VVITHYNLRF AGYYSAWQIA LRDDDVYMTV MPAFHIDCQC TAAMPAFSAG
STFVLLEKYS ARAFWDQVRK YQATVTECIP MMIRTLMVQP AAPTDRQHHL REVMFYLNLS
AQEKDAFTER FGVRLLTSYG MTETIVGIIG DRPGDKRRWP SIGRVGFSYE AEIRDDQNRP
LPAGEIGEIC IKGIPGKTIF KEYYMQPEAT ARALEPEGWL HTGDSGYQDE DGYFYFVDRR
CNMIKRGGEN VSCVELENII SAHPKIQDIV VVGIKDAIRD EAIKAFIVLN EGETLSEAEF
FSFCENNMAK FKVPSFMEIR TDLPRNCSGK IIKKNLK
|
|---|
| |