Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SNSL254_A0027 |
Symbol | |
ID | 6486404 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salmonella enterica subsp. enterica serovar Newport str. SL254 |
Kingdom | Bacteria |
Replicon accession | NC_011080 |
Strand | + |
Start bp | 29465 |
End bp | 29971 |
Gene Length | 507 bp |
Protein Length | 168 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 642735472 |
Product | fimbrial subunit |
Protein accession | YP_002039254 |
Protein GI | 194444519 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG3539] P pilus assembly protein, pilin FimA |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.139125 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 55 |
Fosmid unclonability p-value | 0.0735606 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCTGTGTC CGCAAATCAA TGCCAGCGCT GACGACCTCG CTTATAACCT CGAATTTACC GGCACTATTG TGGCGCAAAC CTGCGACATA GATATTTCCA GCCTCAGTCA AAGTATTGAT TTAGGCCAGT TTGCGGTTGG CGATTTTCCT TCGACGGGAA CAACGACAAA ATTTAAGCCC TTTAATATCA ACCTCAAAAA TTGTTCCCGA GGAATTGCCG GGGCGAAGAT CTGGTTTACC GGCGAACCCG ATCCGGACAA TCCCGCGCTA CTGGCGATCA CCGATACCGG AATGGGAAGC GGAAACATGT TAGCAAGCGG GGTTGGGGTG GAAATTCTGA ATGATGATCA GGATACCATC AGTATCAATA ATGCCGACTC GGTGGTCTAT CCGTTGAAAG CCGGACGCAA CACGCTGTCT TTTTATATTC GCTATAAATC GACCCGGCCG ACGGTCACGT CCGGGAACGC GACGGCGGTC ATGTATTTCG ATATGCAGTA TGAATGA
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Protein sequence | MLCPQINASA DDLAYNLEFT GTIVAQTCDI DISSLSQSID LGQFAVGDFP STGTTTKFKP FNINLKNCSR GIAGAKIWFT GEPDPDNPAL LAITDTGMGS GNMLASGVGV EILNDDQDTI SINNADSVVY PLKAGRNTLS FYIRYKSTRP TVTSGNATAV MYFDMQYE
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