Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SNSL254_A0025 |
Symbol | |
ID | 6483666 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salmonella enterica subsp. enterica serovar Newport str. SL254 |
Kingdom | Bacteria |
Replicon accession | NC_011080 |
Strand | + |
Start bp | 25751 |
End bp | 28417 |
Gene Length | 2667 bp |
Protein Length | 888 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 642735470 |
Product | outer membrane usher protein FimD |
Protein accession | YP_002039252 |
Protein GI | 194446095 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG3188] P pilus assembly protein, porin PapC |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.028823 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 53 |
Fosmid unclonability p-value | 0.118886 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | TTGGCGCAAC GACGCCAGCA CGCGTTTGTC CAGCTTCATG ATGTTATGCG TAATCAGCTT TTCATGACGC GATATTACTC CAGCGTAACT AAACCCGTAT TAACCCCGCT GGCGTTGGCT ATCGCACTGG CACCTGCGCC GGGGTGGGCG GAAAACTATT TCAACCCGGC ATTTCTGTCT GACGACCCGT CTGCGGTGGC CGACCTATCG ACCTTTTCCC GTAATGCCCA GGCGGCGGGG ATGTATCGCG TTGACGTTTA CCTGAACAAT ACGTTTCTCG CGACCAGAGA CATTGCCTTC CAGGCGGTGA AAACGACGGG AAAAAGCGCG CCCACCGATG ACAGCGGATT ACGCGCCTGC CTGACGCCTG AAATGCTTAA AAATATGGGG GTAAACACCG GGGCGTTTCC ACTGTTGGCG AAGGCGGCGG CGGGAAGTTG CCCGGATCTC GCCAGTGCGA TACCGGCCGC CCGGACCCGC TTTGATTTTG CGCAGCAACG TCTCGACATT AGCATCCCGC AGGCGGCGAT GGTTGCCAGC GCCAGAGGCT ATATCCCACC GCAATACTGG GATGAAGGTA TTAACGCGTT GCTATTGAAT TACACCTTTA CCGGCGCGAA TAGTCAGGAT CGGAGCCCAG GCGGCAGTGC GGAGAACAGC TATTTTCTTG GATTGAATAG CGGCCTTAAT CTGGGGGCCT GGCGGTTACG CGACTACTCC ACATGGAACG CGAATAGCGG CGATCAGAAT AGCGACAGCG ACTGGCAGCA CATCAGTACT TATCTGGAAC GTGATGTGGT CTTTTTGCAG GGAGAACTGA CGGCAGGCGA TAGTTATACC CCCTCCGCAT TATTCGACAG CCTTCCTTTT CGCGGGCTAC AACTGGCGTC TGACGACAAT ATGTTGCCAG ACAGCATGAA GGGCTTCGCG CCGACCATTC ACGGCATTGC CAGAAGCAAC GCGCAAGTGA CCATTCGGCA AAACGGCTAC ATCATTAATC AGCGCTATGT GCCGCCCGGG GCATTTACTA TTAATGATCT CTATCCTACC GCCGCCAGCG GCGATTTGAC TGTGGAAGTC AAAGAGTCCG ACGGTTCTAT TAATCGTTAT AACGTGCCCT ATTCCGCCGT GCCGATTCTA CAACGAGAAG GGCGGCTGAA GTATGCGGCG ACGGTGGCGG AGTATCGCAG CGAGAGTAGT CAAAAAGAGA AGGTGAAATT CAGTCAGGCG ACCTTGATAT GGGGGTTACC GCATGGTTTT ACGCTGTATG GCGGAACACA ACTTTCCAGT CATTATCACG CGCTGGCGAT CGGCAGCGGC GCAAATCTGG GCGACTGGGG CGCGGTGTCG CTGGATGTCA CCCAGGCTAC CAGTACGCTG GCGGATAATA ACACCTACCA GGGGCAATCG CTGCGTTTCC TGTATGCCAA ATCGCTTGCA CAGTCAGGAA CCAATTTACA GCTTATGGGC TATCGCTATT CAACCTCGGG CTTTTACACG TTGGATGATA CCACGTGGAA ACGGATGAGC GGCTATGACG ATGACAGTCG GACTGACAGC GATAAAAGCA GGCCGGAATG GGCGGATTAT TACAATCTTT ATTATACCAG GAGGGGCAAA GTACAACTCG ATATTAACCA ACAGCTAGGC GGGTTGGGAT CGCTTTTTAT TACCGGCAGT CAGCAAAGTT ATTGGCACAC TGATGAAAAG GATTCTTTGT TGCAGGTGGG ATACAGCGAT ACGCTGGCGG GTATTGCATG GAGCGTTTCT TACAACAATA ACAAATCCGC AGGCGATGCG GAGCGCGATC AAATTTTCGC GCTGAATATC TCGGTGCCGC TAAGTCAATG GCTGCAACAC GATGATGAGG TCACGCGCCA TCACAATGTT TACGCTACCT TTAGCACCAG TACGGACAAA CAGCATAACG TTACGCAGAA TGCGGGCCTT AGCGGCACAC TGCTGGACGA AAACAATCTT AGTTACAACA TACAGCAAGG TTATCAGAAT CACGGTATTG GCGAAAGCGG CGCCGCCAGT CTGGAATACG ATGGCGCGAA AGGCAACGCC AACATTGGCT ATAACGTTAG CGATAACGGC GATTACCAGC AGGTGAATTA TGGCCTGAGC GGCGGCCTGG TGGCGCACGC GCATGGAGTG ACACTAAGCC AGCCGCTGGG CAATACCAAT ATTTTGATTG CCGCGCCGGG CGCAGCCAAC GTCGGCGTTG TCGACCAGCC GGGTATTCAT ACGGACGCGC GTGGCTATGC GGTGGTGCCG TATGCGACAA CATATCGCCA AAACCGTATG GCGCTGGACG TTAACGCCAT GGCTGATGAT GTCGATATTG ATGACGCGGT GACTCGCGTT GTGCCGACCG AAGGCGCGCT GGTTCTGGCC CGCTTTAAAG CGCGAGTCGG CGCGCGTGCC CTGGTAACGC TGAATCATAA CGGTAAGCCT GTACCCTTTG GCGCAACGGT GACGGTGAAT GATCGCCATG CGGAGGCGAT TGTTGACGAA GCCGGGGAGG TCTATCTTTC CGGGTTGTCA GCGCAAGGCG TTCTGCACGT TCGCTGGGGG AACCTGCCGG ATCAACAGTG CGTCGCGTCC TATCATCTCT CTTCCTCCCG TCAGATTCTG AGTCGACAAC ATGCGGAGTG TCATTAA
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Protein sequence | MAQRRQHAFV QLHDVMRNQL FMTRYYSSVT KPVLTPLALA IALAPAPGWA ENYFNPAFLS DDPSAVADLS TFSRNAQAAG MYRVDVYLNN TFLATRDIAF QAVKTTGKSA PTDDSGLRAC LTPEMLKNMG VNTGAFPLLA KAAAGSCPDL ASAIPAARTR FDFAQQRLDI SIPQAAMVAS ARGYIPPQYW DEGINALLLN YTFTGANSQD RSPGGSAENS YFLGLNSGLN LGAWRLRDYS TWNANSGDQN SDSDWQHIST YLERDVVFLQ GELTAGDSYT PSALFDSLPF RGLQLASDDN MLPDSMKGFA PTIHGIARSN AQVTIRQNGY IINQRYVPPG AFTINDLYPT AASGDLTVEV KESDGSINRY NVPYSAVPIL QREGRLKYAA TVAEYRSESS QKEKVKFSQA TLIWGLPHGF TLYGGTQLSS HYHALAIGSG ANLGDWGAVS LDVTQATSTL ADNNTYQGQS LRFLYAKSLA QSGTNLQLMG YRYSTSGFYT LDDTTWKRMS GYDDDSRTDS DKSRPEWADY YNLYYTRRGK VQLDINQQLG GLGSLFITGS QQSYWHTDEK DSLLQVGYSD TLAGIAWSVS YNNNKSAGDA ERDQIFALNI SVPLSQWLQH DDEVTRHHNV YATFSTSTDK QHNVTQNAGL SGTLLDENNL SYNIQQGYQN HGIGESGAAS LEYDGAKGNA NIGYNVSDNG DYQQVNYGLS GGLVAHAHGV TLSQPLGNTN ILIAAPGAAN VGVVDQPGIH TDARGYAVVP YATTYRQNRM ALDVNAMADD VDIDDAVTRV VPTEGALVLA RFKARVGARA LVTLNHNGKP VPFGATVTVN DRHAEAIVDE AGEVYLSGLS AQGVLHVRWG NLPDQQCVAS YHLSSSRQIL SRQHAECH
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