| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SNSL254_A0023 |
|---|
| Symbol | |
|---|
| ID | 6484270 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salmonella enterica subsp. enterica serovar Newport str. SL254 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011080 |
|---|
| Strand | + |
|---|
| Start bp | 24462 |
|---|
| End bp | 25004 |
|---|
| Gene Length | 543 bp |
|---|
| Protein Length | 180 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 642735468 |
|---|
| Product | fimbrial subunit |
|---|
| Protein accession | YP_002039250 |
|---|
| Protein GI | 194443119 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3539] P pilus assembly protein, pilin FimA |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.362563 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 60 |
|---|
| Fosmid unclonability p-value | 0.242139 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAAGC CTGTACTAGC ATTAATGGTC TCTGCCATTG CCTTTGGCGG AATGTTGTCC
ACCGCGCAAG CGGATACTAC AACCGTCACT GGCGGTACGG TAAATTTTGT CGGACAGGTC
GTTGACGCCG CCTGTTCTGT TTCCGCTGAC TCTGTCGATC AGACCGTGAC ATTAGGCCAG
GTTCGCGCCA GTAAATTAAC CGAGGCCGGT ATGGTGGCGA ATCAAAAAGA AGATTTCACC
ATCAAACTGG AAGACTGCGA TACTCAGACC AGCCAGAATG CGGCGGTGAT TTTTAATGGC
CAACAGGACG CAAACCAGCC GGGGTCGCTG GCGAATACCG CTGGGGCAGG TTCGGCGACG
AATGTGGCAT TACAACTTTA TGGACCAGAT GGCCAGGCGC TGAATATCGG TGAATCGTCC
AGTACTGTTA CCTTGAACGA TGGCGAAAAC GTTATTCCGC TTAGCGTGGA TTATATCGCT
ACCGGTACGG CGACTGCCGG TAATGTTACC GCGACGGCGA CATTTAGCAT GGTTTATTCC
TGA
|
|---|
| Protein sequence | MKKPVLALMV SAIAFGGMLS TAQADTTTVT GGTVNFVGQV VDAACSVSAD SVDQTVTLGQ
VRASKLTEAG MVANQKEDFT IKLEDCDTQT SQNAAVIFNG QQDANQPGSL ANTAGAGSAT
NVALQLYGPD GQALNIGESS STVTLNDGEN VIPLSVDYIA TGTATAGNVT ATATFSMVYS
|
|---|
| |