| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smal_3958 |
|---|
| Symbol | |
|---|
| ID | 6474842 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Stenotrophomonas maltophilia R551-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011071 |
|---|
| Strand | + |
|---|
| Start bp | 4452920 |
|---|
| End bp | 4456129 |
|---|
| Gene Length | 3210 bp |
|---|
| Protein Length | 1069 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 642733161 |
|---|
| Product | heavy metal efflux pump, CzcA family |
|---|
| Protein accession | YP_002030340 |
|---|
| Protein GI | 194367730 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG3696] Putative silver efflux pump |
|---|
| TIGRFAM ID | [TIGR00914] heavy metal efflux pump (cobalt-zinc-cadmium) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.160749 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTCAAGC TGATCATTGA AACAGCGGTA CGCCACCGCT GGCTGGTGGT GTTCATGGCG
GCGCTGATCG CCGCCATGGG CCTGTTCCAG CTGGGCAAGC TGCCGATCGA CGCAGTGCCG
GACATCACCA ACCGCCAGGT GCAGATCAAC ACGGTGGCAC CGGCGCTGAC GCCGGAGCAG
ATCGAACGGC AGGTGACCTA CCCGCTGGAA ACCGCGCTGG CCGGCATTCC CGGCCTGACC
ACCACCCGTT CGTTGTCGCG CAATGGCTTC TCGCAGGTCA CCGCGATCTT CACCGATGCC
ACCGACATCT ACTTCGCCCG CCAGCAGGTA GCCGAACGCA TGCGCGAAGC ATCGGAAGAC
CTGCCCGATG GCGCGTCGCC GATGCTGTCG CCGGTCACCA CCGGCCTCGG CGAGGTGCTG
ATGTGGACCG TGGACTTCAC CGCGTTCGAT CCGGCCAAGC TGGCCAAGCC CGGTGAAGCG
GGTTGGCAGG CCGGCGAGGT CTACCGCACG CCGGAAGGCA ACCTGCTGCG TACGCCGGAA
GAACGTGCGA CCTACCTGCG CACCGTGCAG GACTGGATCA TCGCGCCGCA GATGCGTTCC
AGCCCGGGGC TGGCCGGCGT CGATACGGTC GGCGGCTACG TCAAGGAATA CGGCGTGCAT
CCGGACAGTG CGAGGCTGGC CGCGCACGGA CTCGGCCTGG CCGACCTGGT CACTGCCCTG
CAGCGTTCCA ACGTGCAGGC CGGTGCCGGT TTCGTACAGC GTGCCGGCGA AGGCCTGGTG
GTACGTGCCG ACGGCCTGGC GCTGACCACC GACGATCTGG CACAGGCCCC GGTAGCCACC
CGCAATGGCG TGGTGGTGCG CGTGGCCGAT GTGGCCGACG TCGACCTGAG CCGCGCACCG
CGCTTGGGTG CGGCCAGCCG CAACGGCCAT GAAGCCGTGC TGGGTACCGC GCTGATGATC
GCCGGCGGCA ACAGCCGCAC CGTGGCCCAG GCCGCGGCCG CGCGCCTGGA ACAGGTCAAC
AAGTCGCTGC CGGCCGACAT CGTGGCGGCA CCGGTGCTGG ACCGCAGCGT GCTGGTCAAT
TCGACCATCA AGACCGTGGC CAAGAACCTC ACCGAGGGTG CGCTGCTGGT GGTGGTGGTG
CTGTTCCTGC TGCTGGGCAA CCTGCGTGCA GCAACGATCA CCGCGCTGGT GATTCCGCTG
TCGTTCCTGT TCGCAGTGAT CGGCATGAAC CGCTTCGGCA TCAGCGGCAA CCTGATGAGC
CTGGGTGCAC TGGACTTCGG CATCCTGGTG GACGGTGCGG TGATCGTGGT CGAATCGACG
CTGCTGATGC TGGGCCAGCG CCGCGCCGAA CTGGGTCGTG CGTTGACCGC GATGGAACGC
CTGCGCGTGG CCGCCGATTC GGCGATGAAG ATGGCACGCC CGGCGGCCTT CGGCCAGTTG
ATCATCCTGC TGGTGTTCGC GCCGATCCTC ACCCTGGAAG GCGTGGAGGG CAAGACGTTC
CACCCGATGG CGGCCACGTT CATGCTGGCC CTGATCGGTG CCTTCATCTT CTCCTTCACC
TTCGTGCCGG CGATGGCCGC GCTGCTGGTG CGCGAGCCGA AGGTGAAGGA TGGCGATGCG
CATGCCGATG ATGGCGAGCA CGAAACCAAG CTGATCCGCG TGCTGCGCGC GCGCATCGAA
CCGGTGATCC GCAAGGCCGT GGACCATCCG CGCACGGTGG TGGTAGGCAC GGTGATGATG
GTGGTGGTGG GCATTGGTTC GTTCTCGCTG CTGGGCCGCG AGTTCATGCC GACGCTGGAC
GAAGGCAACG TGGCGATGCA GGCCCTGCGC GTGCCGTCGA CGTCTCTGGA GCAGTCGCTG
GCGATGCAGC TGGCACTGGA AAAGGCGATT GCCAAGCAGC CGGAAGTGGA AACCGTGTTC
TCGCGCACCG GTACCGCCGA GGCGGCGATC GATCCGATGC CGACCAACAT CTCCGACAGC
GTGATCGTGC TCAAGCCACG CAAGGACTGG CCGGATCCGA AACTGGGCAA GGATGCACTG
GTGGCACGCT TCGAAAAGCT GGCCGGGCAG CAGCTGGGCA ACAGCTTCGA GTTCAGCCAG
CCGATCGAAC TGCGCTTCAA CGAGCTGATT TCCGGTGTGC GTACCGATCT GGCGGTGATG
ATCTTCGGCG ATGACTTCAG CCAGCTGCAG AAGGTGGCCG ACCAGGTGGC GCTGAAGCTG
CGCGCGGTGG AGGGCGCGGC CGATGTGCGG GTCGAACAGA TCTCCGGCCT GCCCACGCTC
AACGTGGCGA TCGATCACGT GGCTGCGGCG CAGTACGGCC TGACCGCGGC GGATGTGAGT
GACGCGCTGG CCACCGGCAT CGGTGGTACC GCCGCCGGCA AGATCTTCGA AGGCGACCGT
CGCTTCAACG TGGTGGTGCG CCTGGACGAT GCCTCGCGCA ATGATCCGGA CCAGCTGGCC
TCGCTGCCGA TCGCCACGCC CGCGGGGCTG GTGATTCCGC TGTCGTCGGT CGCGCGCATC
ACGGTCAGCG AAGGACCGAA CCAGATCAGC CGCAACAACG GCAGCCGCCG TGTGGTGGTG
CAGGCCAACG TGCGTGGCCG CGATCTGGGC GGCTTCGTCG GCGAGGCACA GGCGGCGGTG
GCTGATGTTG CATTGCCGCC AGGCGCCTAC CTGACCTGGG GTGGCCAGTT CGAGAATCTG
CAGCGCGCGG AGAAGCGGCT GGCGACGGTG GTGCCGGTGG TGTTCCTGCT GATCGGCAGC
CTGCTGTTCA TGGCCCTGCG CAGCGGCAAG GAAGCCGTGC TGGTGTTCAG CTGCGTACCG
TTGGCGCTGG TCGGCGGCAT TCTTGCGCTG CTGCTGCGTG GCATGCCGTT CTCGGTGTCG
GCGGCGGTTG GTTTCATCGC CGTCTCCGGC GTGGCCACCT TGAACGGCCT GGTGCTGATG
CAGGCGATCC GCGAGCGCCT GGATGCCGGT GACCTGCCGC TGCAGGCGGC GATCAACGGT
GCGTCGAGCC GCATCCGCGC GGTGCTGACC ACGGCGCTGG TGGCGATCGT CGGCTTCATT
CCGATGGCGA TCGCCAGCGG TTCCGGTGCG GAAGTGCAGA AGCCGCTGGC CACGGTGGTA
ATCGGTGGCC TGATCACCGC CACCGTGCTG ACCCTGCTGG TGCTGCCGAC CTTTGCAGCA
CGCGTGGCCA AGCCAAGGGC GGTGGGCTGA
|
|---|
| Protein sequence | MFKLIIETAV RHRWLVVFMA ALIAAMGLFQ LGKLPIDAVP DITNRQVQIN TVAPALTPEQ
IERQVTYPLE TALAGIPGLT TTRSLSRNGF SQVTAIFTDA TDIYFARQQV AERMREASED
LPDGASPMLS PVTTGLGEVL MWTVDFTAFD PAKLAKPGEA GWQAGEVYRT PEGNLLRTPE
ERATYLRTVQ DWIIAPQMRS SPGLAGVDTV GGYVKEYGVH PDSARLAAHG LGLADLVTAL
QRSNVQAGAG FVQRAGEGLV VRADGLALTT DDLAQAPVAT RNGVVVRVAD VADVDLSRAP
RLGAASRNGH EAVLGTALMI AGGNSRTVAQ AAAARLEQVN KSLPADIVAA PVLDRSVLVN
STIKTVAKNL TEGALLVVVV LFLLLGNLRA ATITALVIPL SFLFAVIGMN RFGISGNLMS
LGALDFGILV DGAVIVVEST LLMLGQRRAE LGRALTAMER LRVAADSAMK MARPAAFGQL
IILLVFAPIL TLEGVEGKTF HPMAATFMLA LIGAFIFSFT FVPAMAALLV REPKVKDGDA
HADDGEHETK LIRVLRARIE PVIRKAVDHP RTVVVGTVMM VVVGIGSFSL LGREFMPTLD
EGNVAMQALR VPSTSLEQSL AMQLALEKAI AKQPEVETVF SRTGTAEAAI DPMPTNISDS
VIVLKPRKDW PDPKLGKDAL VARFEKLAGQ QLGNSFEFSQ PIELRFNELI SGVRTDLAVM
IFGDDFSQLQ KVADQVALKL RAVEGAADVR VEQISGLPTL NVAIDHVAAA QYGLTAADVS
DALATGIGGT AAGKIFEGDR RFNVVVRLDD ASRNDPDQLA SLPIATPAGL VIPLSSVARI
TVSEGPNQIS RNNGSRRVVV QANVRGRDLG GFVGEAQAAV ADVALPPGAY LTWGGQFENL
QRAEKRLATV VPVVFLLIGS LLFMALRSGK EAVLVFSCVP LALVGGILAL LLRGMPFSVS
AAVGFIAVSG VATLNGLVLM QAIRERLDAG DLPLQAAING ASSRIRAVLT TALVAIVGFI
PMAIASGSGA EVQKPLATVV IGGLITATVL TLLVLPTFAA RVAKPRAVG
|
|---|
| |