| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smal_3888 |
|---|
| Symbol | |
|---|
| ID | 6474771 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Stenotrophomonas maltophilia R551-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011071 |
|---|
| Strand | - |
|---|
| Start bp | 4377455 |
|---|
| End bp | 4378024 |
|---|
| Gene Length | 570 bp |
|---|
| Protein Length | 189 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 642733090 |
|---|
| Product | pseudouridine synthase |
|---|
| Protein accession | YP_002030270 |
|---|
| Protein GI | 194367660 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
|---|
| TIGRFAM ID | [TIGR00093] pseudouridine synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 0.655167 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCCCACC TGCCGACTGC CGTGCCCGCA ATGCTGATTG CCTTCAACAA GCCCTTCAAC
GTGCTCTGCC AGTTCACCGA CCGCAGCGTG CCGCCGCGGC CGACGCTGGC CGGGTTCGGC
CTGCCGCCGC GCGTGTATGC CGCCGGGCGC CTGGACCATG ACAGCGAGGG CCTGCTGCTG
TTGACCGACA ACGGTACGCT GGCGCACAAG CTGACCGACC CGAAGCACAA GGCGGATAAG
ACCTACTGGG TGCAGGTGGA AGGCATGCCC AGCGACGAAC AGCTGCAGCA GCTTCGCACG
GGCGTGGTGC TCAATGACGG GCCGACCCTG CCGGCGAAGA TCGAGCGCCT CGATCCGGCG
CCGTCGCTGT GGACGCGTGA TCCGCCGGTT CGCTTCCGCA AGACCGTACC CGACAGCTGG
CTGGCGATCA CGATCCGCGA GGGCCGCAAC CGCCAGGTGC GGCGGATGAC TGCGGCGGTG
AACCTGCCGA CGCTGCGGCT GGTACGCGTG TCGATGGGGC CGTACCGGCT GGACGACCTG
CAGCCGGGGC AGTGGCGGCA GATCGGTTGA
|
|---|
| Protein sequence | MPHLPTAVPA MLIAFNKPFN VLCQFTDRSV PPRPTLAGFG LPPRVYAAGR LDHDSEGLLL
LTDNGTLAHK LTDPKHKADK TYWVQVEGMP SDEQLQQLRT GVVLNDGPTL PAKIERLDPA
PSLWTRDPPV RFRKTVPDSW LAITIREGRN RQVRRMTAAV NLPTLRLVRV SMGPYRLDDL
QPGQWRQIG
|
|---|
| |