Gene Smal_3857 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmal_3857 
Symbol 
ID6474740 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameStenotrophomonas maltophilia R551-3 
KingdomBacteria 
Replicon accessionNC_011071 
Strand
Start bp4345361 
End bp4346233 
Gene Length873 bp 
Protein Length290 aa 
Translation table11 
GC content73% 
IMG OID642733059 
ProductWD40 domain protein beta Propeller 
Protein accessionYP_002030239 
Protein GI194367629 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG0823] Periplasmic component of the Tol biopolymer transport system 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value0.4943 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones33 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATGCGCA TCACCCCGCC CCTGCTGGTG CTTGCCGCCA GTCTACTCTC TGCCCCCGTG 
GCGATGGCGT TGAACGAGTA CGGCATCGAA GGCATGGGCG TGGTCTCGAC CCGCGCCGAC
GAGGGCCGCG CCACGATCAG TGCCGATGGC CAGCGCATCG TCTTCGCCCG CCGTGGCGAA
GCTGGCTGGA GCCTGTGGGA GGCGCGCGTG GTGGCCGGCC GCTGGCAGCA GGCGCAGGCC
TTGCCGGTAG GCGTGGCCGG TGAGGCCCGT GATCCCTACT TCAGCCGCGA CGGCCGCTGG
CTGCTGTTCG CGGCCGGCCG CGAGGGCAAG CTGGCGCTGT ATCGGGCCGC TCTCGCCACC
GATGGCCGAC TGGGTACCGC GCAGCTGCTG GCGGGCGACG CGGGCCGCCG GGAAGAGCGT
GGGCCGGCCC TGAGCGCGGA TGGCAGGCAG CTGTTGTTTG CCCGCCAGCA GGGCCGTGGC
GCCGGCTGGG ACCTGTTCGT GGCGACGCTG GATGCGCAGG GACTGCGTGG CCCGGCCAGC
GCACTGAGCG CGTTGAACAG CGCCGACGAC GAGACCGACG GCGACTGGCT GGGGCATGAC
GGCGCCGTGG TGTTCAGCCG CGGCAACGGC ACGACCACGC AGGTGTGGAG CAGCGGCTGC
GCGTGGAGCG GCGTGGCGCT GCAGCCGCTG GGTCTATCGT TCAACCAGGC CGGCGGCTGG
ACCGGCGCGC CGATGATCGA CAACGCCAAG CCCGGCGAGA TGATGGTCGC CAGCAGTGCG
GCGAAGGCAC CGCGTGCCGG GGGCGTGGAT GTGTACCGGT TGGCCGTGCC GAAGGTGGCG
GCGGTGGCCG GGTGCCTACC AGGCGCACGG TGA
 
Protein sequence
MMRITPPLLV LAASLLSAPV AMALNEYGIE GMGVVSTRAD EGRATISADG QRIVFARRGE 
AGWSLWEARV VAGRWQQAQA LPVGVAGEAR DPYFSRDGRW LLFAAGREGK LALYRAALAT
DGRLGTAQLL AGDAGRREER GPALSADGRQ LLFARQQGRG AGWDLFVATL DAQGLRGPAS
ALSALNSADD ETDGDWLGHD GAVVFSRGNG TTTQVWSSGC AWSGVALQPL GLSFNQAGGW
TGAPMIDNAK PGEMMVASSA AKAPRAGGVD VYRLAVPKVA AVAGCLPGAR