| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smal_3419 |
|---|
| Symbol | |
|---|
| ID | 6476629 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Stenotrophomonas maltophilia R551-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011071 |
|---|
| Strand | - |
|---|
| Start bp | 3841810 |
|---|
| End bp | 3844839 |
|---|
| Gene Length | 3030 bp |
|---|
| Protein Length | 1009 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 642732617 |
|---|
| Product | outer membrane autotransporter barrel domain protein |
|---|
| Protein accession | YP_002029801 |
|---|
| Protein GI | 194367191 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3468] Type V secretory pathway, adhesin AidA |
|---|
| TIGRFAM ID | [TIGR01414] outer membrane autotransporter barrel domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 0.270033 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCCGTG CCGTTCCGCG TGCGTTCCGC CCGCGCCGCC TTGCTGTTTC CGTGTTGCAG
GCCCTCGCCG TTCCGTCCCT GCTTCTGACG ACCGCCGGCG TCGCCTGGGC GGGCTGCAAC
AACCCGGCAC TGACCGCCGG CCAGACGGTC ACCTGTGATG CCAACGCACC GAATCCGCAG
ACCGTTCCCA TCACTGCCAG TGGCGTGGCC GGAATCACCG TCAACGTCGC CAATGGTGCC
CAGTTGCAGC AGAATGGTGG TGGATCGGCC ATCGCGCTGG TCGGTGCCGG CGGGCACCTG
CTGTCAAACC AGGGCGCGAT CAGTTCAGTG GGCGGTGTGG CCGTGCAGCT TGGGGGCGGC
AGCCGCGTCG AGAACCTTGG CAGCATCAGC ACCGGCAACA CCATCGCCCT GCAGTTCGTC
GGTGGCGGTA ACAGCGTGTT GATCAACCGC GGAACCATCA GTGGCCGCAC AGGCGTGCAG
TTCGATGCCG GCAACGATCG CCTCGAGATG CAGGCCGGCA GCATCGCCGG AGGTGTCCTG
CAGGGTGATG GCAACGATGT GCTGCAGCTC AGCGACGGTA CGATCGACAG CGTCGACCAG
GGCACCGGTG ATGACCAGGT GACCGTCACC GGCGGCACCG TCACCGGTGT GGTGGTGCAG
GGCAGCGGCC GCGATGATTT CGTCATGAGT GGCGGCACGA TCGGCGCGCT GCAGCAGGGC
GACAACATCG ATACCTTCCG CATGAGCGGT GGCCGCATCA TCGGTGCGTT CGAGGATGGC
GACCAGGCCT GGATGACCGC TGGCCGCGTC GGCCGCGTCA ACATGAAGCT GGACAAGAAT
CTGTGGGATC AGTCCGGCGG CATCGTTGAG GGCAACGTGG TCACCGGCTT CGACACCGAC
ACCATCATCA TCTCGGGTAC GGCCTACATC GGCGGCAATA TCAGTGTCAG TGGTGGTGCC
GACAGCGTGA CCATCACCGA TGGCACCGTG CGCGGCCAGG TACTGCTCAG CACCGGCAAC
GACATCTTCA ACTGGAGAGG TGGCGGCATC GTCTACGGCG CGATCGACAT GGGCCCGGAC
AATGACGTGG CCAATCTCGG CAGCCTCAAT CACGCCAACC TTGGTGCGGT GCCGCTGTTC
GACGGTGGCA GCGGCATCGA TCAGCTCAAC TTCAACAACG TCAAAACCGC TGGCGTGGGG
CGCTTCCAGA ACTGGGAGAC GATCAGTCTG GCCAACAGCA CCGAGCTGAC CTTCGATGGC
GATCTGGTGC TGGGTGACAG CGGAACCGGC ACCGGCACGC TCACGGTGGA TGACACCAGC
ACTGTCTACG CGGGCAGTGG CGGCCATGCC GTCCGTCCGT TCAACAGTGG CGCACTGGTG
GAGATGGTCA ATGCCGGGCG CATCGATCTG ACAGGTACCG GCGCCGGTGA TGTATTTACC
GTCCGCGGCA ACTACCGCGG TGACGGTGGC GGGCTGTACC TGCGTACGGT GTTGGGGGCG
GATAATTCCA CCAGTGATCG ACTGGTGATC GATGGCGGTA CCGCCACTGG CACGACGGGC
ATCGGTGTCC TCAATGCTGG AGGCAGTGGA GCGGCCACGC TGGCCGACGG CATCCTGGTG
GTGCAGGCCC TGAATGGTGC GACGACCTCA CCCGGTGCTT TCTCGCTGTT CGCGCCAGTG
GCTGCTGGTG CCTATGAGTA TTTCCTGTTC AAGGGCGGTG TCAGTTCCGG CAGCGGCGAG
AACTGGTACC TGCGCTCGAC CGTGGTGGCC GGGCCGGCAC CGGCGCCCAA CGGAATCGGT
GTCAACACCA CGCCACCGCC ACCGACACCC CCGGTGGCAC CGCCGCCACC CATTACCCCT
GCGCCGCCAC CGCCACCCGA GGGTGCCACT GATCCCGATC TGACCGCCGG CGAGACCGCG
CCACCACCGC CACCGCCTGA ACCGGCGCCT GTCGCCCCGC CCAGCGATCC GGCGGTGCCG
GACGTGCCGG TTGCGGGTGG CAGCCTGCCG GGTATCGGGA CGCCGCCGAC GCCGGGTGCA
CGCCCCGCCG AGGGCACAGT GGTACCGCTG TACCGCGTGG AGACCGCCAC CTATGCCGTG
GTGCCGCCGC TGCTGCGCGA GACCTCGCTG GCCAGCCTCG GCACGTTCCA CGAGCGGCAA
GGCGAACAAC GCCTGCTGTA CAACCAGGGC GCATTCCGCA CTGCCTGGGG CCGTCTGGTG
GGGCAGAGCA GCGAGATCCA CTGGAAGGGT GATGCGCAGC CGGGCTTTGA TGGCGATGTG
ATGGGCCTGC AGGCAGGCCT CGATGTGTGG GCCGCGGCCA ATGACAGCCA TCGCAATCAG
ATCGGCGTGT TCGTCGGCCG CACCCGCGCG CAGGGCAAGA CCACCGGCCT GGCGCTGGGC
TGGGAGAACG TACAGGTGGG GCAGAACCGC CTGGATGACA AACACGTGGG CCTGTACTGG
ACGTTCACCG ACAGCAGTGG TGGCTACATC GATGCGGTGG CGATGCAGAG CCGCTACGAC
GGGCGCGCTC GCTCATCGCG TGGGCTCGGC TTCGGGATCA AGGGCGATGG CACCAGCGTG
TCGGTGGAAG CGGGCAAGCC GTTGCTGCAC TTCGGTCAGT CCGCATGGTG GCTGGAACCG
CAGGTACAGG TGATCTGGCA ACGCACCTCG CTGGATGACC GGCGTGATGA TGTATCGAGC
GTGCGCTTCG ACAATGACAA TGCCTGGACC GGTCGTGTTG GCCTGCGCCT GGCCGGCGAT
TACCAGTTGG CCGACAACGG CTGGCAGCCG TATTTCAAGC TCAACTACTG GCATGGCCGT
TCCGGTGAGG ATCGCATCCG CTTCGATGAT GACGTGATCA TCAATTCGCA GCGCTCGCGT
TCGCTGGAAG CCGGTGTAGG CGTGGTCGGG CGCTTCAACC GCACCATCAG CGCCTATGCC
GTGGCCGATT ACGCGCGCGA ACTGGGCGGC GACCGCAACG AGAAGCGCCG CATCATCGAA
GGCAACATCG GCCTGCGCGC GGACTGGTAG
|
|---|
| Protein sequence | MSRAVPRAFR PRRLAVSVLQ ALAVPSLLLT TAGVAWAGCN NPALTAGQTV TCDANAPNPQ
TVPITASGVA GITVNVANGA QLQQNGGGSA IALVGAGGHL LSNQGAISSV GGVAVQLGGG
SRVENLGSIS TGNTIALQFV GGGNSVLINR GTISGRTGVQ FDAGNDRLEM QAGSIAGGVL
QGDGNDVLQL SDGTIDSVDQ GTGDDQVTVT GGTVTGVVVQ GSGRDDFVMS GGTIGALQQG
DNIDTFRMSG GRIIGAFEDG DQAWMTAGRV GRVNMKLDKN LWDQSGGIVE GNVVTGFDTD
TIIISGTAYI GGNISVSGGA DSVTITDGTV RGQVLLSTGN DIFNWRGGGI VYGAIDMGPD
NDVANLGSLN HANLGAVPLF DGGSGIDQLN FNNVKTAGVG RFQNWETISL ANSTELTFDG
DLVLGDSGTG TGTLTVDDTS TVYAGSGGHA VRPFNSGALV EMVNAGRIDL TGTGAGDVFT
VRGNYRGDGG GLYLRTVLGA DNSTSDRLVI DGGTATGTTG IGVLNAGGSG AATLADGILV
VQALNGATTS PGAFSLFAPV AAGAYEYFLF KGGVSSGSGE NWYLRSTVVA GPAPAPNGIG
VNTTPPPPTP PVAPPPPITP APPPPPEGAT DPDLTAGETA PPPPPPEPAP VAPPSDPAVP
DVPVAGGSLP GIGTPPTPGA RPAEGTVVPL YRVETATYAV VPPLLRETSL ASLGTFHERQ
GEQRLLYNQG AFRTAWGRLV GQSSEIHWKG DAQPGFDGDV MGLQAGLDVW AAANDSHRNQ
IGVFVGRTRA QGKTTGLALG WENVQVGQNR LDDKHVGLYW TFTDSSGGYI DAVAMQSRYD
GRARSSRGLG FGIKGDGTSV SVEAGKPLLH FGQSAWWLEP QVQVIWQRTS LDDRRDDVSS
VRFDNDNAWT GRVGLRLAGD YQLADNGWQP YFKLNYWHGR SGEDRIRFDD DVIINSQRSR
SLEAGVGVVG RFNRTISAYA VADYARELGG DRNEKRRIIE GNIGLRADW
|
|---|
| |