| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smal_3248 |
|---|
| Symbol | |
|---|
| ID | 6476302 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Stenotrophomonas maltophilia R551-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011071 |
|---|
| Strand | - |
|---|
| Start bp | 3646472 |
|---|
| End bp | 3649204 |
|---|
| Gene Length | 2733 bp |
|---|
| Protein Length | 910 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 642732445 |
|---|
| Product | outermembrane fimbrial usher protein |
|---|
| Protein accession | YP_002029630 |
|---|
| Protein GI | 194367020 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3188] P pilus assembly protein, porin PapC |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 39 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCCCAC ACGCCCCCGC CATCACCCGG CTGGCGGTCG CGCTCGCCCT GGTGCTGGCA
ACGCCGCTGG CGGCGGCGCG CGGCGTCCCG CCCGGCTTCG AGGATCTGGT CGAAGGCCAG
ACCGAACAAC TCGACATCCA ACTGTTCGGC CGCTCGGCCG GGCTGTCGCC GGTGCGCGTG
ACCCTTGAAC ACGTGCAGCT GGAAGATCCG GCAGGCGTGC TGCAGGCGCT GGATCTGCCC
GTCGAGGCGC AGGCCGCGCT GCTGCCCGCG TTGTCCCAGC CGATGCCGCG CAACAGCCAT
CTGGCCTGCC GCTTCGGTGG CGCTACTGCC GGCTGCGGCT ATCTCGATCC ACCGGACGAC
CCCGCCGCCG TGCGCGCGCT GTACGACGAA GGCGAGGGCG CGGTGCGCCT GTTCGTCGCC
CGCCAGTGGA TTCCGGGCAA GCCGGCTGCC GAACGCTTCC ACACCGTCAG CGCCAACGCC
GAAAACGCCT TCCTGCACCA GCAGGTGATC AATGTGAGTG GCAGCCGTGA CTACCAGACG
CTGTCCGCGC GCGGCACCGG TGTGCTGGGC CTGTTCGATC GCGGACATGT CTCCGCCGAA
TGGAACTTCA ACCAGCAGCG CTACCGCAGC CGCGGCAGTG ACAGTGAGTT CCAGTTCGAC
AACGTCTACT ACCGTCACGA CCTGGGGCAG GCGCACTACC TGCAGGCCGG GCGCATGGAC
CGCCGCAACC TGTCCAGCCC GCAGGGCGGC ACCTTCAGTT TCAGCATGCT GCCGCTGGAC
CGCCTGCAGG GCCTGCGCGT GGGCACCACC CAGGCCTATG TGGACGCCGA TGCCGCCGTG
CAGGCCACGC CGCTGACCGT GCTGCTGGCA CGCGACGCAC GCGTGGATGC CTACGACGGC
ACGCGCCTGC TGCAGACCTC CTACCTGCAG GCCGGCATCA ACCAGATCGA CACCCGCAAC
TTCCCGTTCG GCAACTACAA CGTCACCCTG CGCATCTACG AAGATGGCGT GCTGGTGCGC
AGCGAAGACG CACCGTTCGA CAAGGGCGGC GACTGGACCA ACAGCCAGTG GCAGTGGTTC
GTGCAGGGCG GCAGGCGCAA CGAGCGCCGC AGTGACCGCT TCGATGGCGA ACGCGTGGCG
GTGGCCGGGA TGCGCGTCCC GCTGGGCCGC GACGTGGCGA TGGTGGCCGG TGCCGCCGAC
CTCGGCGGCT TCCGCTATGG CGAGCTGCGT GTGGACCTTC GCCGCCTGTA CGCCACCCAG
GAACTGCGCG CCAGCTTCGG CGGCATGCGC GGCAACGATG GCAGCACCGG CCAGCAGCAC
CAGCTGTCGT ACCGCCGCAT CGCATCCTGG AACATCTACC AGCAGCGCAT GCGCGGCAAG
GCCTGCCAGT TCGAGGCCGA CGCCCGCGAC CAGCTGGGCT GCACCAACTC GCTCAGCGCT
TCGATGGCGC TGCCGCTGGC TGGTGGCAGT GCCTATGTGG GCTACACGCG GCGTCAGACC
TGGCGCGCGG GACGCATCCT GCCGGGTGCG GAAGACGATC CGCTGGCCGG GCTGGACCCG
CTGCTGCCAC CGCCACCGCC GTGGCAACCG CGCCGCGAGC CGCAGCTCAG CCGCACCTGG
CAGGCCAGCT TCAGCCGCAG CCATCGCTGG CAGGATTTCA GCGTCTCCAC CCGCGTGGGT
GTGTGGCAGC AGCGTGCCAG CGACAGCCTG CGCGGCAGTG ATCAACGCGA CCGCGGCATC
TACTTCAACC TGAGCCTGAC CCGCCTGCTG CGTGGCACCG CCAGCAGCGG CCAGCGCCGC
TACAGCGTGG ACGTGCGGCA GCCGCAGCAT CAGCGCCCGG ACATCAACTA CAGCGTTGGC
CATAGCCTGC GCCAGGAGGT GGATGCGCAG TACCGCGAGC TGTCGGCCGA ACTACGCGCC
AACAACAGTG ACCGCTACAG CGCCACGCTC AGCGGCCAAT TGCAGAACAG CCTGGGCCAG
AGCGGTGCCA CGCTGGCGCA CTACCAGCAG CGCGGCCGCA GCGAGACCGC CTACAGCGGC
ATGCACAGCT CCGGCTTCGC ACTGGGCAAG CGCGGCTTCT ACTGGAGCGG CAGCAACGGT
GCCGATGCTG GCCTGGCCGT ACAGGTGGCC GACACCGACG ACGTCGACCT GCGTGGCGTG
GCGGCCGAAC TGCAGGTGGG CGGCCTGCGC AGGCAACGCC TGCAGATTGG CGAGCGCCGG
TTGCTGCCGT TGTCGTCGTA CCAGTCGCAC CGCGCTGAAG TGCAGGACGC CAGCACGCTG
GACAGCATCG CCGCCATCCG CGTGACCGGC GTGGGTGGTG CACGGCCGAT GTTCCTCAGC
CCCGGGCGGC TGATGCGCAT GCCGGTGCCG ATCGAGGTGA CCTACACCTT CATCGGCAAC
GCCAAGGATC TTGCCGGAGC ACCGCTGGGC GGCGCCCGCA TCCTCAACGC GCCGGTGCCC
GGCACCAGTG CCAACGGTGG CTTCGTCGCC GACTTCCCGC GTCGCGAAAC AACGCTGTAC
CTGCTGCAGG ACGACCGCCT GCTGCACTGC CCGCTGCAGG TGCGCGAGCG CCGCCAGGTG
GTGCTGCTGG TCGGCGCCGT GCACTGCGAG CCGCTGGCCG TGGCCCAGCT GCCGCCGGAG
ATCCGCCAGC AGGCCCGCGT GACCCGGCTG CTGCAGGAGC GCGCGTTGAT TGCCGCCACG
CCCCAGACCG CTGCTGCAGG AGGAACGCCA TGA
|
|---|
| Protein sequence | MTPHAPAITR LAVALALVLA TPLAAARGVP PGFEDLVEGQ TEQLDIQLFG RSAGLSPVRV
TLEHVQLEDP AGVLQALDLP VEAQAALLPA LSQPMPRNSH LACRFGGATA GCGYLDPPDD
PAAVRALYDE GEGAVRLFVA RQWIPGKPAA ERFHTVSANA ENAFLHQQVI NVSGSRDYQT
LSARGTGVLG LFDRGHVSAE WNFNQQRYRS RGSDSEFQFD NVYYRHDLGQ AHYLQAGRMD
RRNLSSPQGG TFSFSMLPLD RLQGLRVGTT QAYVDADAAV QATPLTVLLA RDARVDAYDG
TRLLQTSYLQ AGINQIDTRN FPFGNYNVTL RIYEDGVLVR SEDAPFDKGG DWTNSQWQWF
VQGGRRNERR SDRFDGERVA VAGMRVPLGR DVAMVAGAAD LGGFRYGELR VDLRRLYATQ
ELRASFGGMR GNDGSTGQQH QLSYRRIASW NIYQQRMRGK ACQFEADARD QLGCTNSLSA
SMALPLAGGS AYVGYTRRQT WRAGRILPGA EDDPLAGLDP LLPPPPPWQP RREPQLSRTW
QASFSRSHRW QDFSVSTRVG VWQQRASDSL RGSDQRDRGI YFNLSLTRLL RGTASSGQRR
YSVDVRQPQH QRPDINYSVG HSLRQEVDAQ YRELSAELRA NNSDRYSATL SGQLQNSLGQ
SGATLAHYQQ RGRSETAYSG MHSSGFALGK RGFYWSGSNG ADAGLAVQVA DTDDVDLRGV
AAELQVGGLR RQRLQIGERR LLPLSSYQSH RAEVQDASTL DSIAAIRVTG VGGARPMFLS
PGRLMRMPVP IEVTYTFIGN AKDLAGAPLG GARILNAPVP GTSANGGFVA DFPRRETTLY
LLQDDRLLHC PLQVRERRQV VLLVGAVHCE PLAVAQLPPE IRQQARVTRL LQERALIAAT
PQTAAAGGTP
|
|---|
| |