Gene Smal_3175 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmal_3175 
Symbol 
ID6476146 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameStenotrophomonas maltophilia R551-3 
KingdomBacteria 
Replicon accessionNC_011071 
Strand
Start bp3558363 
End bp3558767 
Gene Length405 bp 
Protein Length134 aa 
Translation table11 
GC content53% 
IMG OID642732371 
ProductFimbrial protein pilin 
Protein accessionYP_002029557 
Protein GI194366947 
COG category[N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG4969] Tfp pilus assembly protein, major pilin PilA 
TIGRFAM ID[TIGR02532] prepilin-type N-terminal cleavage/methylation domain 


Plasmid Coverage information

Num covering plasmid clones32 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones37 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGTGGGA AGCGTGGTTT TACGTTGATT GAAATGATGA TAGTTGTCGC GACTATCGCG 
GTGCTTGCGG CCATTGCCGT GCCGATGTAC CAGATGTACG TGGCCAGATC GCAGCTGACG
GCGGGTCTGG CTGAGGTAAG TGGTGGGCGC ACGATGTTCG AGTCGCAGAT TCTCGCCAAC
AACATTACCA CCTTCCAGCT TGCAGATATT GGTCTGCAGT CCAGTACTGC GCGATGCGTG
ATGAGCATGG AATCGTCGGA AACCGGAAGT ATCCAGTGTC GCCTTAAGGG CAATCCGTTA
GTCAACGGAA AGACGGTGCA GATTGCACGT AATATGTCCG GCAATTGGCA GTGCAAAGTT
GATGCGAACA TCCCTGCTTA TCTCTGGCCT CGTGACTGCA ACTGA
 
Protein sequence
MRGKRGFTLI EMMIVVATIA VLAAIAVPMY QMYVARSQLT AGLAEVSGGR TMFESQILAN 
NITTFQLADI GLQSSTARCV MSMESSETGS IQCRLKGNPL VNGKTVQIAR NMSGNWQCKV
DANIPAYLWP RDCN