| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smal_2441 |
|---|
| Symbol | |
|---|
| ID | 6476931 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Stenotrophomonas maltophilia R551-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011071 |
|---|
| Strand | - |
|---|
| Start bp | 2745103 |
|---|
| End bp | 2747550 |
|---|
| Gene Length | 2448 bp |
|---|
| Protein Length | 815 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 642731629 |
|---|
| Product | type IV secretion/conjugal transfer ATPase, VirB4 family |
|---|
| Protein accession | YP_002028827 |
|---|
| Protein GI | 194366217 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3451] Type IV secretory pathway, VirB4 components |
|---|
| TIGRFAM ID | [TIGR00929] type IV secretion/conjugal transfer ATPase, VirB4 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.06702 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 0.584537 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTCAGCC CTGACACCTC CATCAGTGAG TTCATTCCGT TGTCGTCGCA TGTTGCCCCG
AACGTGGTCA AGACCACGGG CGGTGACTAT CTGCTGACCT GGCATCTGGA AGGGCTGCCT
TTCGTCGGCC GCGAGGAGTG GGAGCTCGAG CATCGTCACA ACACGTTCAA CCGTCTGCTG
CAGACATTGC GCGCACCCGA CTTCGTCAAC GTTGCCTTCT GGGTGCATGA CATCCGTCGT
CGCCGCACGT TGAAGGGCAA GAGCAACTAC AAGCAGCGCT TCAACCAGGA CGTGTCAGAT
CAGTACATGG GCATGCTGTC CTCGCAGCGC ATCATGCAGA ACGAGCTGTA CCTGACCATG
ATCTATCGCC CGGTGGTGGC GGGTAAACGC TTCGTCGAAA AGTCGGCGAA CGTGGAGAAG
CTCCGCGCCG AGCAGGAGCA GGCGGTCGAG AAGCTGATGG AACTGGCCGG CAACGTCGAG
GCCGTGATCC GCGACTACGC GCCGTATCGC CTGGGCATGT ACGAAGCCAA GAACGGTGTG
GTGTTCTCGG AAACGCTGGA GCTGTTCGGC TACCTGATCA ATCGCATCGA TGAGCCGGTG
CCGGTGCTGT CGGCGCCGAT CAAGGATTAC CTGCCTGTCA GCCGCCACAT GTTCTCGGCC
AAGACCGGCG ATTTTGCGAT CAACACCCCC AATGGCGCCA ACCATTTTGG CGCCATCCTG
AACATCAAGG AGTATGCCGA GGGGACCTAC CCGGGCATCC TCAACGGCCT GAAGTACCTG
GATTACGAGT ACGTCATCAC CCATTCGTTC AGCCCGATGG GGCGTCAGGA TGCGCTGAAG
GTGCTCGACC GCACCAAGGG CATGATGATC TCCTCCGGCG ACAAGGCGGT CAGCCAGATC
GTCGAGCTGG ACCAGGCCAT GGATCAGCTG TCGTCGGGCA ACTTCGTGCT GGGTGAATAC
CACTTCATCA TGGCGGTCTA CGGCGACACG CAGGCCAAGC TTTCGCAGAA CGTCGCCTCG
ACCCGTGCCG AGCTGTCAAA CGCCGGATTC GTGTCGACCA AGGAAGACCT GGCGGTTACC
TCGTCCTTCT ATTCGCAGCT GCCGGGTAAC TGGCGCTACC GCACTCGCCT GGCCAATGTC
AGTTCGCTGA ACTTCCTGGG CCTGTCGCCG CTGCACAACT TCGCCACCGG CAAGCAGCAC
AACAATCCGT GGGGCGACTG CGTCACCACG CTGCAGACCA CCAACGGCCA GCCGTACTAC
TTCAATTTCC ACGCGACCCA TCCGTCGGAA AACTCGCTGG GCGAGAAGGC GATCGCCAAC
ACCATGGTGA TCGGCAAGTC CGGTACCGGT AAGACCGCGC TGATCAACTT CCTGCTCAGC
CAGGTGCAGA AGTACGAGCC GTCGCCGACC ATCTTCTTCT TCGACAAGGA CCGCGGTGCT
GAGATCTTCG TGCGGGCCTG CGGAGGTAAC TATCTGGCCC TGGAGAACGG CGCGCCGACC
GGCTTCAACC CGTTCCAGTG CGAGAACAAC GAAGCCAACG TGCAGTTCCT GGCCGACCTG
ATCAAGGTGC TGGCCGGCAA GCGCGAGTAC AGCGCCCGCG AGGAAGAAGA CATCTACCGC
GCCGTGGAAA GCATGCTCGA TACGCCGATG CATCTGCGCA GCATGACCAA CTTCCAGAAG
AGCCTGCCCA ACATGGGCGA CGATGGCCTC TACGCGCGCA TGCGCCGTTG GACCTCGGGC
AATTCGCTGG GCTGGGTGTT CGACAATCCC GTGGATACCG TTGACCTGAG CAAGGCCAAC
ATCATCGGCT TCGACTACAC CGACATCATC GACAACCCTG AAGTGCGCGT GCCGGTCATT
AATTACCTGC TGCACCGCCT GGAGTCGCTG ATCGACGGCC GTCCACTGAT CTATGTGATG
GACGAGTTCT GGAAGATCCT GGATGGCGAG GGTGGCCTGA AGGAGTTCGC GAAGAACAAG
CAGAAGACCA TCCGTAAGCA GAATGGTCTC GGCATCTTTG CCACACAGAG CCCGGAGGAC
GCGCTGAAGA GTGATATCTC CGCCGCCCTG ATCGAGCAGA CCGCTACCCT GATCCTGCTG
CCGAACCCGA ATGCCAGCAA GAGCGACTAC ATGGATGGCC TGAAGTTGAC CGAGGCCGAG
TTCAATGTGG TTACCGCCTT GGACGAGCGC TCGCGTTGCT TCCTGGTCAA GCAGGGTCAT
GCGTCCAGTG TCTGCCAGCT CAACCTGCGC GGCATGGACG ACATCCTGTC GGTGATCTCG
GCGTCGACCG ACAACATCGA CATCATGCAT CGTGTCCTGC AGACCGCCGC CGTGCGTGCA
CGTGTGACGG TGGATGAGCT GACGCCGGAA CAGTGGCTGG AAGATTTCTA CAAGAACCGC
AAGGGCTCCG GAAAGCCCGC ATCCAACAGT AAGGAGGTTG CAGCATGA
|
|---|
| Protein sequence | MFSPDTSISE FIPLSSHVAP NVVKTTGGDY LLTWHLEGLP FVGREEWELE HRHNTFNRLL
QTLRAPDFVN VAFWVHDIRR RRTLKGKSNY KQRFNQDVSD QYMGMLSSQR IMQNELYLTM
IYRPVVAGKR FVEKSANVEK LRAEQEQAVE KLMELAGNVE AVIRDYAPYR LGMYEAKNGV
VFSETLELFG YLINRIDEPV PVLSAPIKDY LPVSRHMFSA KTGDFAINTP NGANHFGAIL
NIKEYAEGTY PGILNGLKYL DYEYVITHSF SPMGRQDALK VLDRTKGMMI SSGDKAVSQI
VELDQAMDQL SSGNFVLGEY HFIMAVYGDT QAKLSQNVAS TRAELSNAGF VSTKEDLAVT
SSFYSQLPGN WRYRTRLANV SSLNFLGLSP LHNFATGKQH NNPWGDCVTT LQTTNGQPYY
FNFHATHPSE NSLGEKAIAN TMVIGKSGTG KTALINFLLS QVQKYEPSPT IFFFDKDRGA
EIFVRACGGN YLALENGAPT GFNPFQCENN EANVQFLADL IKVLAGKREY SAREEEDIYR
AVESMLDTPM HLRSMTNFQK SLPNMGDDGL YARMRRWTSG NSLGWVFDNP VDTVDLSKAN
IIGFDYTDII DNPEVRVPVI NYLLHRLESL IDGRPLIYVM DEFWKILDGE GGLKEFAKNK
QKTIRKQNGL GIFATQSPED ALKSDISAAL IEQTATLILL PNPNASKSDY MDGLKLTEAE
FNVVTALDER SRCFLVKQGH ASSVCQLNLR GMDDILSVIS ASTDNIDIMH RVLQTAAVRA
RVTVDELTPE QWLEDFYKNR KGSGKPASNS KEVAA
|
|---|
| |