| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smal_2409 |
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| Symbol | |
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| ID | 6476899 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Stenotrophomonas maltophilia R551-3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011071 |
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| Strand | - |
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| Start bp | 2710050 |
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| End bp | 2712239 |
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| Gene Length | 2190 bp |
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| Protein Length | 729 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 642731597 |
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| Product | diguanylate cyclase with PAS/PAC sensor |
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| Protein accession | YP_002028795 |
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| Protein GI | 194366185 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain
[COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.798311 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 29 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCCGGCC AGGGAAGCAA CGGCAACGGG CTGCTGGAGC GGCGCCTGCA GGAGCTGGCT
GAAGAACGCC GCCGGCTGGC GATGATCATC GACGGCACCG CCGCCGGCAC CTGGGAATGG
AACGTGCAGA CCGGCGAGAT GCGGGTCAAC GCGCGCTGGG CCGAGATCGT CGGCTACCGG
CTGGAAGAAC TGGAGCCGGT GTGCCAGAAG ACCTTCCTGA CATTGGTCCA TCCCGACGAT
ATCGCCCTGT CCGATGCGGC GCTCGAGGAC CACTTTGAAG GCCGCAGCGA CAACTACGTC
TGCCTGTTGC GCATGCGCCA CAAGAACGGC CAGTGGATGT GGATCCACGA CCGTGGCCGC
GTGTTCGAGT GGGATGGGCA GGGGCGGCCA CTGTGGATGG CCGGTGCGCA TGCCGATGTG
ACCGAACTGC AGCAGGCACG CCAGGATGCG GCCGAGACAC GGCAGCGACT GCAGGCGGTG
GTCGACGCCT CCGACGAGGT TGCGGTGATC GCCACCGATA TCGACGGCAC CATCACCCTG
TTCAATACCG GCGCACAGCG CCTGCTCGGC TACACCGCCG AGGAGGTGGT TGGCCAGCGG
CGCCTGGATG CGTTCCATGA CCCGGACGAG CTGAGCGCCT GGCTGCAGCC GCTGGCGGAC
GACGACGGCG AGGTACCTGG CGTGTTCGAG GCGCTCAGTG CCCGTGCCGA TGGGCAGACC
TATTCGCGGC AATGGACGCT GCGTCGCAAG GATGGCCAGT CACGCCAGGT CCGCCTGTCG
ATCAGCCGCA TGGATGGCGC CGACGGCGCG CGCATCGGCT ACGTCGGCAT GGCGATCGAC
ATCACCGAGA TCCTGCAGGC GCGCGCCGAA GCACGGCTGT CGGCGGAGAA GTTCGCCGGT
GCGTTCACCT CGGCTGCACT GGGCATGGCA CTGGTGTCGC TGGAAGGACG CTGGCTGGAT
GTCAACGACG CGCTGTGCCG GATCCTCGGC TATCCACGCG AAGAACTGCT GCAGGTGGAT
TTCCAGCGCC TGACCCATCC CGATGACCTG CAGACAGATC TGGCCCTGGT GCAGGACCTG
CTGGCCGGGC GGCGCAGTCA CTACCACCTG GAAAAGCGTT ATCTCGATCG CGATGGAAAG
GTGATCTGGG CGCGGCTGTC GGTGTCGCTG GTGCGCAGCG AACGCGGCGA GCCTGTGCAT
TTCGTGTCGC AGATCCAGGA CATCAGCGCC CAGCGCAGCA GCGAGCAGCG CTTGTTCGAA
AGTGAGCAGC GCAGCCGCAT CACTCTTGAT GCGGTCGCCG ACCTGGTGCT CAGTGTCAGC
CTCGATGGCC GCATCGACTA TGCCAATGCG GCTGCGGTGC GTACCTTGGC CGGTGATGGC
GCGCTGTCGC TGGCTGGGCA CAAGGTGCAG GACGTGCTGG CGTTGACCAC CGAGTACGCG
CCTGGATCGG TGCTGGATGT CTCGGTGCTG CTGGATCCGG AAAGCAACGC AGTGGACCTG
CACGCCGACC TGCTGTTGCG GCTGGGCACG GCGACCATAC CGGTGGACCT CACCCGCGCC
TGGCTTCGCG ATGACGAAGG CCGGGTGCGC GGCGCGGTGT GGGTACTGCG CGACGATACC
CAGCAGCGTG CACGCCAGCG CGAGGCGCGA CACCTGGCCG AAATCGACCC GTTGACCGAG
CTGAGCAACC GCCGCGGCTT CGAGGTGCAC CTGCAGCAGG CGATCACCCG TGTCGAGCGC
ACGGGCCAGG CCGCGTCGTT GATGTACATC GACCTGGATC GCTTCAAGCC GGTCAACGAC
ACCTGGGGCC ACCTGGCCGG CGATGCGGTG CTGTGGGCGG TGGCCAGCGT GCTGCGCCAT
GGCGTGCGCG ATTCGGATGT GGTGGCACGG CTGGGGGGGG ACGAGTTCGC GGTGATCCTG
TCCGGCTGTA CGCCGCGGCG TGCCGCGCGT ATCGGCGGCG AACTGCTGCA TACCCTGGCG
TCGCTGTCGA TTCCATGGGA CCAGGACCGC CTGCATGTCG GGGCCAGCAT CGGCATCGCG
CCGCTGGCTG GCGGCATGAG CGTGGACCAG GCGGTGGCTG CCGCCGACGC CCAGTGCTAC
CGGGCCAAGG CGATGGGACG CAACAACGTG CAGGTGCAGG GTGAGGCCAG TGAGCTGCCC
GGCGACGACG CGGATGCGGC CGAAGGCTGA
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| Protein sequence | MAGQGSNGNG LLERRLQELA EERRRLAMII DGTAAGTWEW NVQTGEMRVN ARWAEIVGYR
LEELEPVCQK TFLTLVHPDD IALSDAALED HFEGRSDNYV CLLRMRHKNG QWMWIHDRGR
VFEWDGQGRP LWMAGAHADV TELQQARQDA AETRQRLQAV VDASDEVAVI ATDIDGTITL
FNTGAQRLLG YTAEEVVGQR RLDAFHDPDE LSAWLQPLAD DDGEVPGVFE ALSARADGQT
YSRQWTLRRK DGQSRQVRLS ISRMDGADGA RIGYVGMAID ITEILQARAE ARLSAEKFAG
AFTSAALGMA LVSLEGRWLD VNDALCRILG YPREELLQVD FQRLTHPDDL QTDLALVQDL
LAGRRSHYHL EKRYLDRDGK VIWARLSVSL VRSERGEPVH FVSQIQDISA QRSSEQRLFE
SEQRSRITLD AVADLVLSVS LDGRIDYANA AAVRTLAGDG ALSLAGHKVQ DVLALTTEYA
PGSVLDVSVL LDPESNAVDL HADLLLRLGT ATIPVDLTRA WLRDDEGRVR GAVWVLRDDT
QQRARQREAR HLAEIDPLTE LSNRRGFEVH LQQAITRVER TGQAASLMYI DLDRFKPVND
TWGHLAGDAV LWAVASVLRH GVRDSDVVAR LGGDEFAVIL SGCTPRRAAR IGGELLHTLA
SLSIPWDQDR LHVGASIGIA PLAGGMSVDQ AVAAADAQCY RAKAMGRNNV QVQGEASELP
GDDADAAEG
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