| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smal_2332 |
|---|
| Symbol | |
|---|
| ID | 6476815 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Stenotrophomonas maltophilia R551-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011071 |
|---|
| Strand | - |
|---|
| Start bp | 2621960 |
|---|
| End bp | 2623609 |
|---|
| Gene Length | 1650 bp |
|---|
| Protein Length | 549 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 642731513 |
|---|
| Product | protein of unknown function DUF894 DitE |
|---|
| Protein accession | YP_002028718 |
|---|
| Protein GI | 194366108 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.0975452 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 32 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGTGAACG CAACCGCGTC GCAACCCCCC GCACAGGCTG CAGGTGCCTG GTCCCCGCTG
AAGATCCGGA TGTTCCGCTC GATCTGGCTG GCGATCCTGG CCAGCAACAT CGGCACCTGG
GTCAATGATG TCGCCGCCGC CTGGGTGATG GCCGAGCGCA CCGGCTCACC ATTGATGGTG
GCGCTGGTGC AGTCGGCCAC CACGGTGCCG ATCGTGCTGC TGGCGCTGGC CGCCGGCACC
CTGGCCGACA TCGTCGACCG CCGCAAGTAC CTGCTGGCCA CCCAGGGCTG GATGCTGCTG
GTCGCCGCAG TGATGGCGGC GCTGACCGCG CTGGACATGC TGACGCCGCA GCTGCTGGTG
CTGCTGACCT TCTGCATGGG CTGCGGTGCG GCGATGGCGA TGCCGGCACA GGCGGCGATC
GTTTCCGAAC TGGTGCCGCA GCCGATGCTG GCCTCGGCGG TGGCGCTGAA CTCGATCGGC
ATCAACATCG CACGCTCGAT CGGCCCGGCC ATCGGTGGCG TAATCGTGGC CCAGCTCGGT
GCGGTCTGGG CCTTCGGTTT CAACGCCATC ACCTTTGCCG CGATGCTGTT CGTGGTATGG
GGCTGGAAGC GTGACCCGAA GCAGTCCAGC CTGCCGCCGG AAGGCTTCGG TGCTGGATTG
AAGGCGGGCC TGCGCTACGC CAGTCGCGCC GGGCGCCTGC AGGCGGTGCT GATCAAGTCG
GTCGGCTTCT TCTTCTTCGC TGCAGCGATG AACGCAATGC TGCCGGTGGT GGTACGCGGG
CAGATGCACG GCGGGGCGGG GCAGTACGGC ATTCTGTTGG GCTGCATCGG TATCGGCGCG
GTGGGCGGTG CGCTGTTGCT GCCGAAGCTG CGTGCGCAGA TGGATCGTGA CCTGCTGGTG
CTGCTGGCCA CGCTGTCGCT GGCGTTGAGC CTGGTCGGGC TGGCGCTGAG TCGCAGCTGG
TACGTGCTGC CGCTGGTGAT GCTGATCAAT GGCTTCGCCT GGATCACGGT GCTGTCGTCG
CTGCAGATTG CGGCACAGAC GGCGGTACCG GCGTGGGTGC GTGCACGGGC GCTGGCGCTG
TACATCATGG TGTTCTCCGC GGGCATGGCT GCCGGTGGCC TGAGCTGGGG CGCGCTGGCG
CAGCGTACGT CGCCGGAGCT CGCGTTGCTG GTGGCGGCTG CCGGCGCGGT GATCGGTGGC
CTGCTGGTCT GGCGCGTGCG CATCGCCGGG GCGGAAGACC TGAACCTCAG CCCGGCCGGG
CATTGGCCCG CACCGGAACT GTCGGTGCCG GTATCGAATG ATCGTGGCCC GGTACTGGTC
ACCCTCGAGT ACCGCATCGA CGAGGCTGAC CGGGCCGCGT TCCAGGCGCA GATGCGCGCG
CTGGGCACGA TCCGCCGCCG CGATGGCGCG GTGGTCTGGG GCGTAGTGGA GGACGTGGCC
AGTCCAGGCA TCCACCTGGA GTATTTCGTG ACCCCATCGT GGCTGGAGCA CCTGCGCCAG
CACGAGCGCA TCACCGCCGA TGACAAGGCG ATCCAGGAAG TGCTGCGCGG GCTGCATCGC
GGTGAGCGTG CACCAGTGGT GCGCCATTTC GTCGGCGGCC ATGACCCGCT GCCGAAGACC
GGGGTCCCGC ACCACCACAG CGACATCTGA
|
|---|
| Protein sequence | MVNATASQPP AQAAGAWSPL KIRMFRSIWL AILASNIGTW VNDVAAAWVM AERTGSPLMV
ALVQSATTVP IVLLALAAGT LADIVDRRKY LLATQGWMLL VAAVMAALTA LDMLTPQLLV
LLTFCMGCGA AMAMPAQAAI VSELVPQPML ASAVALNSIG INIARSIGPA IGGVIVAQLG
AVWAFGFNAI TFAAMLFVVW GWKRDPKQSS LPPEGFGAGL KAGLRYASRA GRLQAVLIKS
VGFFFFAAAM NAMLPVVVRG QMHGGAGQYG ILLGCIGIGA VGGALLLPKL RAQMDRDLLV
LLATLSLALS LVGLALSRSW YVLPLVMLIN GFAWITVLSS LQIAAQTAVP AWVRARALAL
YIMVFSAGMA AGGLSWGALA QRTSPELALL VAAAGAVIGG LLVWRVRIAG AEDLNLSPAG
HWPAPELSVP VSNDRGPVLV TLEYRIDEAD RAAFQAQMRA LGTIRRRDGA VVWGVVEDVA
SPGIHLEYFV TPSWLEHLRQ HERITADDKA IQEVLRGLHR GERAPVVRHF VGGHDPLPKT
GVPHHHSDI
|
|---|
| |