Gene Smal_2205 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmal_2205 
Symbol 
ID6476536 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameStenotrophomonas maltophilia R551-3 
KingdomBacteria 
Replicon accessionNC_011071 
Strand
Start bp2468620 
End bp2469234 
Gene Length615 bp 
Protein Length204 aa 
Translation table11 
GC content68% 
IMG OID642731387 
Producttype II secretion system protein J 
Protein accessionYP_002028592 
Protein GI194365982 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG4795] Type II secretory pathway, component PulJ 
TIGRFAM ID[TIGR01711] general secretion pathway protein J
[TIGR02532] prepilin-type N-terminal cleavage/methylation domain 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value0.0654355 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones29 
Fosmid unclonability p-value0.781056 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAGCGCG CCGTGGGCGG TTTCACCCTG ATCGAGGTGA TGATCGCGAT CACCATCATG 
GGCGTGCTGG CGCTGATCTG CTGGCGTGCG CTCGACAGCG TGGCCAGCAG CGACCAGCGC
CTGCGACAGG CAGATGCCGA GACCACCACC GCACTGCGCG TGCTGCAGCA GTTCCAGCGG
GATATCGAGA TGCGTGCGGA TGATGCGCTG ATGAATGGCG CGGTGCGTCC GGCTGATCGT
CCGCAGCGAT TGCTGCCTCC GTCGCTGGTG AGTGAACGGC ACCCGGATGG AAGCTTCGCG
CTGGAGATCA CCCGCAGCGT GGGCAGCGAT GGGCTGCACT GGCAGCGGGT GCGCTGGTGG
CGTCAGGGCA GCACACTGTG GCGGGCCAGC GGCGCGGCCA CGGACCGGTA TCCATTGCCG
GCGCCGGAAC AATCCAAGGG CATCGTGGTA GCCAAGGATG TGCAGCGGTT CGAGCTGCGG
GCGTGGCAGC CCGGCGCGGG ATGGGCCGTG TTGCCGAGCA AGGGCGAGGT GCTGCCAGCC
ACCGGACTGG AGCTGCGGCT GGGCCTGCGC GATGGGCGTG GGCCGTTGAG CTACCGGCGG
GTGCTGGAGT TGTAG
 
Protein sequence
MKRAVGGFTL IEVMIAITIM GVLALICWRA LDSVASSDQR LRQADAETTT ALRVLQQFQR 
DIEMRADDAL MNGAVRPADR PQRLLPPSLV SERHPDGSFA LEITRSVGSD GLHWQRVRWW
RQGSTLWRAS GAATDRYPLP APEQSKGIVV AKDVQRFELR AWQPGAGWAV LPSKGEVLPA
TGLELRLGLR DGRGPLSYRR VLEL