Gene Smal_2013 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmal_2013 
Symbol 
ID6476191 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameStenotrophomonas maltophilia R551-3 
KingdomBacteria 
Replicon accessionNC_011071 
Strand
Start bp2254283 
End bp2254759 
Gene Length477 bp 
Protein Length158 aa 
Translation table11 
GC content67% 
IMG OID642731195 
ProductCupin 2 conserved barrel domain protein 
Protein accessionYP_002028400 
Protein GI194365790 
COG category[S] Function unknown 
COG ID[COG1917] Uncharacterized conserved protein, contains double-stranded beta-helix domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value0.706602 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones30 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCCATGC TTCTCGGTAC GTTGATATCC ATGGCTGCGC CTGCGACCGG CGGCGGCCCG 
GCCAGCGGTA ATCTGAGCAT AACGCCTGCT GGCAGCGCAT CGTCCGTGGC GGGCCCCGCT
GACTACTTCA CCGGCAACGT GCGCATCGAC GGCGGCTTCC AACGCCCTGC GCCGGCACGC
GTAGGCGGTG CAACGGTCAC CTTTGAGCCC GGCGCACGCA CGGCCTGGCA CACCCACCCG
CTGGGCCAGA CCCTCATCGT GACGGCAGGC GTGGGCTGGG TGCAGCAGTG GGGTCAGCCA
CGCCAGCAGA TCCGTCCGGG TGACACCGTG TGGATCGCCC CGGGCGTGAA GCACTGGCAT
GGCGCAAGTG CCGCAGTGGC GATGACCCAC ATCGCAATTG CCGAGGCGGT GGATGGCAGC
CCGGTGACGT GGCTGGAGAA AGTGAGCGAC GAAGAATATT CGGAGATGCG CGAATGA
 
Protein sequence
MSMLLGTLIS MAAPATGGGP ASGNLSITPA GSASSVAGPA DYFTGNVRID GGFQRPAPAR 
VGGATVTFEP GARTAWHTHP LGQTLIVTAG VGWVQQWGQP RQQIRPGDTV WIAPGVKHWH
GASAAVAMTH IAIAEAVDGS PVTWLEKVSD EEYSEMRE