Gene Smal_2000 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmal_2000 
Symbol 
ID6476178 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameStenotrophomonas maltophilia R551-3 
KingdomBacteria 
Replicon accessionNC_011071 
Strand
Start bp2239818 
End bp2240699 
Gene Length882 bp 
Protein Length293 aa 
Translation table11 
GC content66% 
IMG OID642731182 
ProductRNA polymerase, sigma-24 subunit, ECF subfamily 
Protein accessionYP_002028387 
Protein GI194365777 
COG category[K] Transcription 
COG ID[COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog 
TIGRFAM ID[TIGR02937] RNA polymerase sigma factor, sigma-70 family
[TIGR02957] RNA polymerase sigma-70 factor, TIGR02957 family 


Plasmid Coverage information

Num covering plasmid clones28 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones35 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGACGATT CCACTGCGCT GTTCTCCCGC CTCCGCCCAC GCCTGTTCGG CGTGGCCTAC 
CGCATGCTTG GGTCTTCGCA CGAAGCCGAG GACGTGGTGC AGGACGTCTG GCTGCGCTGG
CATGGCGCCG ATCAGTCACA GATCGAGAAT CCCGAAGCCT GGCTGGTCGC CACTACCACC
CGTCGCGCCA TTGATGGCCT GCGCCTGGCA CGGCATACGC GCGAACATTA TGTCGGCATG
TGGTTGCCCG AGCCGCTGCT GACCGATGAC ACCAGCACCC CTGAATATGT ACTGGAAACC
GCCAGCGATC TGTCGGTCGC CTTCCTCAGC GTGCTCGAAC GGTTGGCGCC GGATGCGCGT
GCGGCCTTCC TGCTGCACGA CGTGTTCGAT CAGGACTACG CGGTGGTCGC GCGCACCCTG
GACAAGACAG AAGCCGCCTG CCGGCAGATT GTGCATCGTG CACGCCTGCA GCTCAGGCAG
GAGCGCCCGC GCTACAACGT CCCGCAGGAC GTGCACCAGA AATTGCTGCG CCGTTTCGCC
GAGGCCGCAT CCAGTGGCGA TTTCCGCACG ATGAAGGCGC TGATGGCCGA GTCGGCCGAG
CTGGTGGGTG ACGGCGGCGG CATCGTCACC AGCTTCCCCA AACCGATGGT CGGGGGCGCA
CGCATTGCCC AGCTGCTGTA CGCCCCGCAC CTGCGGCGCA GCGCGCAATT GCGGATGGTG
CCGGCCATGC TCAACGGACG GCTGGGACTG CTGCGCTATT TCGATGGCGA GCTGGAAGCG
GCGATGGCCT TCGAGACCGA TGGCGAACGG ATCACGCAGA TCCTGGTGCA GCGCAACCCG
CACAAGCTGC AGCGGCTGGC ACTGCCCACC TCGATTCAGT AG
 
Protein sequence
MDDSTALFSR LRPRLFGVAY RMLGSSHEAE DVVQDVWLRW HGADQSQIEN PEAWLVATTT 
RRAIDGLRLA RHTREHYVGM WLPEPLLTDD TSTPEYVLET ASDLSVAFLS VLERLAPDAR
AAFLLHDVFD QDYAVVARTL DKTEAACRQI VHRARLQLRQ ERPRYNVPQD VHQKLLRRFA
EAASSGDFRT MKALMAESAE LVGDGGGIVT SFPKPMVGGA RIAQLLYAPH LRRSAQLRMV
PAMLNGRLGL LRYFDGELEA AMAFETDGER ITQILVQRNP HKLQRLALPT SIQ