Gene Smal_1980 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmal_1980 
Symbol 
ID6476087 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameStenotrophomonas maltophilia R551-3 
KingdomBacteria 
Replicon accessionNC_011071 
Strand
Start bp2222532 
End bp2223023 
Gene Length492 bp 
Protein Length163 aa 
Translation table11 
GC content62% 
IMG OID642731162 
Productprotein tyrosine phosphatase 
Protein accessionYP_002028367 
Protein GI194365757 
COG category[T] Signal transduction mechanisms 
COG ID[COG0394] Protein-tyrosine-phosphatase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value0.221335 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones23 
Fosmid unclonability p-value0.141438 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCCGTC GTGTTCTGTT CCTTTGTACC GGCAATTCCG CGCGCAGCGT GTTGGCCGAA 
TCGACCCTGA AAATGTGGGG CGAAGGCCGC TATCAGTCCT TCAGTGCAGG CAGCCAGCCA
GCCGGTCGGG TCAATCCGTT CGCCATTGCC CAATTGCAGC GCGAGGGCTT CCCGGTGGAG
GGCCTGCGCA GCAAGTCCTG GGACGAATTT GCCGAAGCGG ATGCTGCTGC CATGGATCTG
ATTGTCACCG TGTGCGACAG CGCGGCCGCT GAGGCGTGCC CGGTTGTGTT TGGCGATTTC
GTGCGCGTGC ACTGGGGCCT GTTCGACCCG GCCGGTGTGG AAGGCTCGGA TGCACAGAAG
GCTGAAGCGT TCGACCGGGC ACATCAGATC ATCAAGGCCC GGCTGAAGGC CTTCCTGGAG
ATTCCTGACG GGGCATGGGA TGACCGTGAG TCTCTCAAGG CCCAGCTTGA TCCGATTGCG
CAGATCCACT GA
 
Protein sequence
MTRRVLFLCT GNSARSVLAE STLKMWGEGR YQSFSAGSQP AGRVNPFAIA QLQREGFPVE 
GLRSKSWDEF AEADAAAMDL IVTVCDSAAA EACPVVFGDF VRVHWGLFDP AGVEGSDAQK
AEAFDRAHQI IKARLKAFLE IPDGAWDDRE SLKAQLDPIA QIH