Gene Smal_1914 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmal_1914 
Symbol 
ID6475939 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameStenotrophomonas maltophilia R551-3 
KingdomBacteria 
Replicon accessionNC_011071 
Strand
Start bp2153263 
End bp2156022 
Gene Length2760 bp 
Protein Length919 aa 
Translation table11 
GC content67% 
IMG OID642731096 
Productdiguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) 
Protein accessionYP_002028301 
Protein GI194365691 
COG category[T] Signal transduction mechanisms 
COG ID[COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain 
TIGRFAM ID[TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones24 
Fosmid unclonability p-value0.321269 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGGACCAAG GGATCATCGC CAGCCTGCTG CAGCACCCGC TTGCGTCGGC GCTGGTCATC 
GTCGACCGCA CGGGCCGCCC GCTGGCGGCC AATCCGGCTG CGCGCGAGCA TGGCCTGCCG
GCCACCGTGG CTGCGTACGC GCCGATGCTG GAAGATCTGC GCCTGTTGGC GGCCGATGGT
GGCATCGTGG CCTGCACGCT TCCTGGCGGC CCGCGCGGGC ACTACGATGG CCACCTGCGC
GCCGTGCACG ATGGCGCAGG CAACTTGCTG GCCTTCACGC TGAGCATCCC CGAGCCGGTG
CCGGTCGATG GTGGCGGGCG CTGGGAACTG GCCTTGGACA GTGCCGGCCA CAGCTTGTGG
GACTGGGACA TTCCCAGCGA CCGCGTAGTC CGCACGCCGG CGCTGGGTGA TGAAACCGCC
ACCGAGATAC TGGCGCGCGT ACACAGCGAA GACATCGGCC AGGTCCGTGT CGCGCTGGAC
CAGCACCTGC GTGGCCTGAG CGAGCAGTAC AGCGCCCAGT TCCGGTTCCG CCAGGCCGAT
GGCCAATGGC GCTGGGTGCT TGATCGCGGT CGTGTGGTGG CGCGCACCGC CGACGGCCAG
CCACTGCGCA TGGTCGGCAC GCATACCGAT ATCGAGCAGC AGAAACAGCT GGAAGGCCTG
CTGCAGGAGC AGCAGCTGCA CCTGAGCGAG GCCCAGCGCA TCGCCAGCAT GGGCAGCTGG
TCGTTCGACC CCGATAGTGG CCTGTTCTGG TGGTCGCCGG AGCTGCGTTC GCTGCTGTCG
CTGGAGCAGG GCAGCGTGCC CGGCCAGCGG CGCTGGTTGA AACAGCTGCA TCCGCGCTCT
CGTGGTGCGC TGCGTGCCGC CTGGCGGCGG GTATGGCGCG ATGGCCGCGC AGCCAACATC
GAGCTGGAAC TGACTCGCGG CAACGAGCCC TCGCAGCACC TGCGGCTGTG GATGCAGCCG
CTGCTGGACA CCGATGGCCA GCCCAAGCGC CTGCTCGGCC AGGTGCAGAA CATCACCGAG
CAGCACCAGA CCGACGCGTT GATCCGCTGG CGCACCGAGC TGCTCAACCG TGTCTCCGCA
CTGGGCCGCA TCGGCGGTTG CGAGATCGAA GTGCAGACCC GGCACATGCA GTGGACCGAG
GAGTGCTACC GCATCCACGG CCTGCGCAAG GAGCCGATCA GCCTGGACCA GGCACTGGCG
CTGTACACCG AAGATTCGCG CAGCGCCTTC GAGGCCGCAC TGGTGCGGAT TGCCGGCGGT
GGCCTCCCCG AGCAGCTGGA CCTGTGCTTC TACCGCCAGT CCGGCCTGCG CGTGTGGGTG
CAGGTGCTGA TCGAGCTGGA TCGCCGCGAT GGCCTGCCGC CGCGCTTCGT GGTCCTGTTC
CGTGACATCA CCCGCGAGCG CGAGGCCAAC GAGCGCATCG AGCTGCTGGC GCACTACGAT
CTGCTGACCG GCCTGCCCAA TCGCGTGCTG CTCGGCGAGC AGACGGCAGA AGCCATCGAG
GAAGCGCGCG ACCGCGGCAC CTCGCTGGCG ATGCTGTTCA TTGATCTGGA CGGCTTCAAG
ACCATCAACG ACAGCTTCGG CCACGCCACC GGTGATGCGC TGCTGAAGGC CGCGGCCACG
CGCCTGCACC AGAACCTGCG CAACAACGAT CTGTTCGGCC GTTTCAGTGG CGACGAGTTC
ATCGTGGTGT TGCGCGACCT GGCCGAGCCG GAAGACGCCG GCCACGTGGC GCGCAAGCTG
ATCGCTTCGC TGGCCGAGCC GCTGCGCCGT GGCGACACCA CGCTGAAGGT CGGCGCCAGC
GTTGGCATTG CGATGCTGGG TGACGCGCAG ACTGATTTCG ACTCGCTGCT GCGCGCCGCT
GATGCCGCGA TGTACGCGGC CAAGGAAGCC GGGCGGAATA CCTACCAGTA CTACAGCCAG
GACGCGCTGG CGCGTATCCA GCGTCGGCTC GAGCTCGAGC ACGCGCTGCA TGGCGCGATC
GAACGCGAAG AGTTCAGCCT GGCCTACCAG CCGCTGCTGC ATGCGCATCA TGGCGAACCG
CCGGCGATCG AGGCACTGTT GCGCTGGCAT CGGCCCGGCA TCGGCTACTG CAGCCCGGCC
GAATTCATTC CGATTGCAGA GAAGTGCGGC GAGATCGTGC GCATCGGCGA CTGGGTGCTG
AACGAAGCCT GCCGGCAGGC AATCGCCTGG GACCGGGCTG GCCTGTGTTT TGACCGCATC
GCAGTCAATG TGTCGGCAGT GCAGCTGCGT GATCGCGGTT TTGCTGAGCG GGTGATCGAG
ATCTGCCACG CCCACGGCTG GCCGCCGCAG CGGCTGGAGC TCGAGCTGAC CGAGTCGGCG
TTGATCCGTG ACACCGACAT TCTGCGCCAC TGCTTCGACG TGCTGGAACG GCACGGCGTG
CCACTGGCAG TGGATGACTT TGGTACCGGC TTCTCCAATC TGAACTACCT CAACCGTTTC
CCGGTGGGGC GCCTGAAGAT CGACCGCAGT TTCGTGCAGG GCATGCTGCA TGATTCGGGT
ACGGCCGAAG TGACCCAGGC CATCGTGCAC CTGGGCCACG CGCTGGGCAT GAAGGTAGTG
GCCGAAGGCG TGGAAACGCA CCAGGAAGAA GACATGCTGC GCCGCCAGGG CTGCGACGAG
ATCCAGGGCT ACCTGTACTC GCGCCCGCTC AGCCCGCGTG ACCTGGCGCA GTGGTTGCGA
CAGCAGCACG CCGCGCCAGG GCGCACCGAT GCTGCCAGCG AGGCCGTGCT GGCACGCTGA
 
Protein sequence
MDQGIIASLL QHPLASALVI VDRTGRPLAA NPAAREHGLP ATVAAYAPML EDLRLLAADG 
GIVACTLPGG PRGHYDGHLR AVHDGAGNLL AFTLSIPEPV PVDGGGRWEL ALDSAGHSLW
DWDIPSDRVV RTPALGDETA TEILARVHSE DIGQVRVALD QHLRGLSEQY SAQFRFRQAD
GQWRWVLDRG RVVARTADGQ PLRMVGTHTD IEQQKQLEGL LQEQQLHLSE AQRIASMGSW
SFDPDSGLFW WSPELRSLLS LEQGSVPGQR RWLKQLHPRS RGALRAAWRR VWRDGRAANI
ELELTRGNEP SQHLRLWMQP LLDTDGQPKR LLGQVQNITE QHQTDALIRW RTELLNRVSA
LGRIGGCEIE VQTRHMQWTE ECYRIHGLRK EPISLDQALA LYTEDSRSAF EAALVRIAGG
GLPEQLDLCF YRQSGLRVWV QVLIELDRRD GLPPRFVVLF RDITREREAN ERIELLAHYD
LLTGLPNRVL LGEQTAEAIE EARDRGTSLA MLFIDLDGFK TINDSFGHAT GDALLKAAAT
RLHQNLRNND LFGRFSGDEF IVVLRDLAEP EDAGHVARKL IASLAEPLRR GDTTLKVGAS
VGIAMLGDAQ TDFDSLLRAA DAAMYAAKEA GRNTYQYYSQ DALARIQRRL ELEHALHGAI
EREEFSLAYQ PLLHAHHGEP PAIEALLRWH RPGIGYCSPA EFIPIAEKCG EIVRIGDWVL
NEACRQAIAW DRAGLCFDRI AVNVSAVQLR DRGFAERVIE ICHAHGWPPQ RLELELTESA
LIRDTDILRH CFDVLERHGV PLAVDDFGTG FSNLNYLNRF PVGRLKIDRS FVQGMLHDSG
TAEVTQAIVH LGHALGMKVV AEGVETHQEE DMLRRQGCDE IQGYLYSRPL SPRDLAQWLR
QQHAAPGRTD AASEAVLAR