| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smal_1826 |
|---|
| Symbol | |
|---|
| ID | 6475779 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Stenotrophomonas maltophilia R551-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011071 |
|---|
| Strand | + |
|---|
| Start bp | 2052036 |
|---|
| End bp | 2053676 |
|---|
| Gene Length | 1641 bp |
|---|
| Protein Length | 546 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 642731008 |
|---|
| Product | thiamine pyrophosphate protein domain protein TPP-binding |
|---|
| Protein accession | YP_002028213 |
|---|
| Protein GI | 194365603 |
|---|
| COG category | [E] Amino acid transport and metabolism
[H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0028] Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.339659 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 0.631348 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCAAGG GTTCAGATCT GCTTGTCGCC GCGCTTGAGA ACGAAGGCGT CGAGCGTATT
TTCGGCATCC CCGGCGAGGA GAACCTCGAC GTGGTCGAAT CACTCCGCCA TTCCAGCATC
GAGCTGGTCA TCACCCGCCA CGAACAGGCG GCGGTGTTCA TGGCAGCCAC CTACGGCCGC
CTGACCGGGA AGCCGGGTGT GTGCCTGGCC ACGCTCGGCC CGGGCGCGCT CAACTTCACC
ACCGGCGCCG CGTACGCGCT GCTGGGTGCG TGGCCGGTGA TCATGATCAC TGGCCAGAAG
GGCATCGTCG CCAGCAAGCA GGCGCGTTTC CAGATTGTCG ATATCGTCAG CACGATGAAG
CCGCTGACCA AGCAGGCGCG GCAGATCGTC TCGGCGCGCA CCATTCCGAC CATCGTCCGC
GAGGCATTCC GTACCGCGCT GGAAGAGCGC CCGGGCCCGG TGCTGCTGGA GCTGCCCGAA
GACATCGCGG CCGATGAGGT CGGGGACGTA GCGCTGATTC CGCCGCACGC GGTGGATCGT
CCCATTGCCA GTCCGGAAGC ACTGGACCGC GCGGCGGAGA TCATCCGCAA TGCCAAGCGC
CCGCTGCTGA TGATCGCCTC GGCGGCGTCG CGGCCGCAGT CCAGCGAAGC GTTGTCGGCC
TTCGTGTTGC GCGCGGGTAT TCCGTTCTTC ACCACGCAGA TGGGCAAGGG GGCGGTGGCC
GGTGGCTCGG GCCTGTACAT GGGCACCGCC GCGTTGACCG AGCGTGACTA CGTGCATATG
GCCATCGACC AGGCCGACGT GATCGTGACC ATCGGCCATG AGGTCACCGA GAAACCGCCG
TTCGTGATGC GCCCGGGTGG GCCGACCGTG ATCCATATCG GCTATTCGCA GGCGGCGGTG
GAGCAGGTGT ACTTCCCGCA GGTGGAAGTG ATCGGTGACA TCGGCCGTTC GCTGACCCAG
CTGGCCGACC GTATCGAAGG TGCAGTGCCG AACGCCGACG CGCTGCTGCC ACTGCGCGCG
ACCATTCTAG AACACCTGGC TGACCGTGCC GAGGAAGCTG GATTCACCCC GCAGCGGCTG
GTGCACGACG TGCGCCAGGT GATGCCGCCG GACGGCATCG TGGCGCTGGA CAACGGCATG
TACAAGATCT GGTTTGCGCG CAATTACCGC ACCCAGGTGG CCAATACGCT GCTGCTGGAC
AACGCGCTGG CGACGATGGG CGCGGGCCTG CCGTCGGCGA TCATGGCCTC GATCCTGTAC
CCGCAGCGGC GGGTGCTGGC GGTGTGCGGC GATGGCGGTT TCATGATGAA CAGCCAGGAG
CTGGAGACCG CGCGCCGGCT GGGCCTGAAC CTGGTGGTGC TGATCCTCAA CGATGGCGCC
TACGGGATGA TCCGCTGGAA GCAGGCGGTG GATGGCTTCA CCGACTACGG CATGACCTTC
AGTAACCCGG ATTTCGTGAA GTATGCGGAA GCCTATGGCT GCAAGGGGCA TGAGGTGACG
GCCATCGAGC AGTTCATCCC GACGCTGGAG GCGGCGTTCA ACGAGGGTGG GGTGCACCTG
GTATCGGTGC CGATCGACTA CTCGGAGAAC CAGCGGGTGC TGGTGGACGA GCTGCGTCAG
GCGTTCCCGG GGAACGGGTA G
|
|---|
| Protein sequence | MSKGSDLLVA ALENEGVERI FGIPGEENLD VVESLRHSSI ELVITRHEQA AVFMAATYGR
LTGKPGVCLA TLGPGALNFT TGAAYALLGA WPVIMITGQK GIVASKQARF QIVDIVSTMK
PLTKQARQIV SARTIPTIVR EAFRTALEER PGPVLLELPE DIAADEVGDV ALIPPHAVDR
PIASPEALDR AAEIIRNAKR PLLMIASAAS RPQSSEALSA FVLRAGIPFF TTQMGKGAVA
GGSGLYMGTA ALTERDYVHM AIDQADVIVT IGHEVTEKPP FVMRPGGPTV IHIGYSQAAV
EQVYFPQVEV IGDIGRSLTQ LADRIEGAVP NADALLPLRA TILEHLADRA EEAGFTPQRL
VHDVRQVMPP DGIVALDNGM YKIWFARNYR TQVANTLLLD NALATMGAGL PSAIMASILY
PQRRVLAVCG DGGFMMNSQE LETARRLGLN LVVLILNDGA YGMIRWKQAV DGFTDYGMTF
SNPDFVKYAE AYGCKGHEVT AIEQFIPTLE AAFNEGGVHL VSVPIDYSEN QRVLVDELRQ
AFPGNG
|
|---|
| |