Gene Smal_1796 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmal_1796 
Symbol 
ID6475749 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameStenotrophomonas maltophilia R551-3 
KingdomBacteria 
Replicon accessionNC_011071 
Strand+ 
Start bp2018920 
End bp2019606 
Gene Length687 bp 
Protein Length228 aa 
Translation table11 
GC content67% 
IMG OID642730978 
Producthypothetical protein 
Protein accessionYP_002028183 
Protein GI194365573 
COG category[R] General function prediction only 
COG ID[COG3895] Predicted periplasmic protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value0.207584 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones23 
Fosmid unclonability p-value0.122862 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGTGTAG TTCCCAGTCT GTTGGCAGCC TCCCTGGGGT TGGTCCTGGC CGCGTGCCAG 
CCAGCCCAAC CGCCCGTCGC GGGCAGCAGC AACCCCGAAC CGGCCGCCCC TCAGCCAAGC 
CCCAGTACCG GTGCTGGCAG CGAGACCACC TATCGCTGTG GCGATCTGGA CGTGCGCGCG 
ACCTTCAATG GTGAGGATGC GGCCACGGTG GTGATCGGCG ACCGTACCTT CGCCATGACC 
TCCGAGCGTG CGGCTTCCGG CGCCAAGTAC GGTGATGGCC AGGGCAATAC CTTCTGGACC 
AAGGGCAGCG ATGACGGCCT GCTGAGCCTG AAGGGTGAGG CCGACCGCGA GTGCCATGCG 
GTGGAAGCCA CCGAAGGCGA TGGCAGCGCC GGCAATGCGG CGTTCCGTGC CACCGGCAAC 
GAGCCGGGCT GGCTGGCCAT CGTTGACGGC GACACGCCCG GCCTGCAGGT GGAAGTCGAC 
TACGGCGAGC GTCGCTTCGA CGTCGCCAAG CCCACCGAAG GTGCTGACGG CTGGAGCGGC 
AAGGCGTCCG ATGGCACCGA CGTCAAGCTC AGCTTCCAGC GCACTACCTG CCAGGACGAC 
ATGAGTGGCG AGGCCTTCGA TGCCAAGGTG AATCTGACCA TCGGAACCCG CCAGTATCAC 
GGCTGCGGCA ACTTCGGCAC GAAGTAA
 
Protein sequence
MRVVPSLLAA SLGLVLAACQ PAQPPVAGSS NPEPAAPQPS PSTGAGSETT YRCGDLDVRA 
TFNGEDAATV VIGDRTFAMT SERAASGAKY GDGQGNTFWT KGSDDGLLSL KGEADRECHA 
VEATEGDGSA GNAAFRATGN EPGWLAIVDG DTPGLQVEVD YGERRFDVAK PTEGADGWSG 
KASDGTDVKL SFQRTTCQDD MSGEAFDAKV NLTIGTRQYH GCGNFGTK