| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smal_1611 |
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| Symbol | |
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| ID | 6475481 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Stenotrophomonas maltophilia R551-3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011071 |
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| Strand | + |
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| Start bp | 1809501 |
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| End bp | 1812341 |
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| Gene Length | 2841 bp |
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| Protein Length | 946 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 642730793 |
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| Product | diguanylate cyclase/phosphodiesterase with GAF sensor |
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| Protein accession | YP_002027999 |
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| Protein GI | 194365389 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.319418 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 0.0964053 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGTCCACGC ATGCTGAACC GGCGGAAGAA CCACTACACG AGGCCGTGCT GAGCACGGCG
CTGGTGCGCG CGCTGCATGC GCTGCTGCCG GAAACGGCGG TGGTCCGGGT CGGCTGGGAC
GACCTGCAGC TGGGGCGTGG CGAGGGCGGC TGGCCGCCCG TCAGCGGTGA CCGGCCTGCA
GTACCTGCTG GCATCGGCGA TGGCCAGCAT GGCTGGGACT ACGACGGTGC GCGCCTGCTG
CTGTCGGTGG AGGGCGCGAT CCCCTCGCCA GCGTGGTGGG GGCTGGCCCG GCAGGCGATG
GAGCTGGCCC TGCAGCGTGG CCGCCAGGCG GGACAGATCA AGGCGCTGGA GGAGGCCGAG
CGGCTGCAGC AGGCGCTGTT CCAGATCGCC GACCTGGCCG GTGCCGACCT GGAGATGGGC
GAGATGCTGC GCCACGTGCA CGGTGTGCTG GGCACGCTGA TGTACGCCGA GAACTGCTAC
ATCGTCGAGT ACGACGATGT GCGCGACCAG ATCCGGTTCC TGTACTTCGC CGACCAGGTC
GATGACTTCG TTGCCAACCC GGCGCAGAGC CACGACGCCA GCGAGATGCC GCGCAGCCTG
ACGGTGGCGC TGCTGCGCCA TGGCAAGCCG CTCAGTGGCC CGTCACGCGA GCTGCTGGCG
CGGGTGGTCG AGCAGGAGCA CGATCCGCAG CGTGGCCCGG AAAGCCTGGA CTGGCTGGGC
GTGCCGATGC TGCGCGATGG CCGCGTGTGC GGTGCCATCG TGGTGCAGAG CTACGAACAC
GCGGCCCGCT ATGGTGAGTC CGAGCGTGCC CTGCTGGGTT TTGTCGCCCA GCACGTGCAG
ACCGCGATGG ACCGGCGCCA GGCGCAGGTG CGGCTGGAGC AGCAGGTCGA GCGGCGCACG
CAGCAGCTGC AGCGTGCCAA CCACAGCCTG CAGGACGAGG TGGCCGAACG GCGCCGTGCC
GAGCAGCTGC AGACCGCGTT GTACAACATC GCCGAGATGG CGATGTCGGC CGACAGCCTG
GCCCAGTTCT ACGGGCGGGT ACACGGTGTG GTCGGGCGCC TGCTCGACGC GCGCAATTTC
TACATCGCGC TGGTCAACGC GGCCGGCAAC GGCCTGGATT TCGTCTATTC GGTGGACGAG
CACAATGCCA GCCGCGCGCC ACGGCCGTTC AGCCGTGGCC TGACCGAATA CGTGGTACGC
AACCGGCGGC CGCTGTTGGC TTCGCGCGCG CAGATCGATG CGCTGCTGGC CAACGGCGAG
GTGCGTGAAT CCGGTGCGCG TTCGCACTGC TGGCTGGGCG TGCCGCTGCT GCGCGACGAC
GAAGTGGTCG GCGCGATCGT GGTGCAGAGT TACAGCCAGA ACAGCACCTT CAGCGTGCAC
GACCAGCGCC TGCTGACCTT CGTCGCGCAG AACATCGGTA CCGGCCTGGC CCGCCAGCGC
GACCAGCAAC GGCTGCGTTC GGCGCATGCC GAGTTGGAAA AACGGGTGGA AGAGCGCACC
CGGGAGCTGG CCGAGGTCAA CGAGAAACTG CTCGGCCAGA TCGGCGAGCG GTTGCGCGCA
GAACAACGGC TGACCCACCA GGCCATGCAT GATGCGCTGA CCGGGCTGCC CAATCGCCTG
CATCTGCTCG ACCGCCTGCA GGACGCATTG GCGCTGGCCC GGCGCGAGGG TGGACCGGTG
TTCGCCGTGT TGTTCCTTGA CCTGGACCGC TTCAAGCTGG TCAACGACAG CATCGGCCAT
GCCGCGGGCG ATCGCATGCT GGTGGAGGTT GCCAAGCGCA TCGTGTCGAT GGCCGGCACC
GACGATGTGG TGGCACGGCT GGGCGGTGAC GAATTCGCAG TGCTGCTGCA GTGTCCGCAG
GGCCTGGCGC AGGCACTGGA TTTTGGTCAG CGACTGCTGC TGGCGCTGCA GGAATCGATG
TGGATCGCCG GCCGCGAACT GTTCCCGTCC GGCAGCCTGG GCATCGCCCT GTGGAACCCG
CGCTACCGTA CCGGCGAAGA ACTGCTGCGC GATGCCGACG CCGCGATGTA CCGGGCCAAG
GCGCAGGGCC ATGACCGCTG CGCGATCTTC GACGAGGACA TGCGCGAGCA GGCCATGCGC
AGCCTCGACT TGGAAGCCGA TCTGCGCCGC GCGATCAATA ACCACGATTT CCTGCCGTTC
TACCAGCCGA TCGTGCGCCT CTCCGATGGC GAGGTGGTCG GGCACGAGGC GCTGCTGCGC
TGGCAGCACG AGCGCCGTGG TCTGCTGCTG CCGGGTGCGT TCCTGGAGCT GGGTGAGGAG
AGTGGGCTGA TCGAACAGGT CGACTGGCTG ATCTACGAAC AGGTCATCGC CGGCCTGGCC
GAAGGCGGCC ACACCTATGT GTCGGTGAAC GTGTCACCGC GTCATTTCCG CTCTGCGGAG
TTCAGCGGCC GCCTGTTCGG CCTGCTGGAT GCGTACGGTG CCGATCCGCA ACGGCTGCGG
CTGGAGATCA CCGAGGTCGC ACTGCTGGAT GACGGCCCGC ACACGCTGCG CATCCTGCAG
GGCCTGCGCG AGCGCGGCAT CCAGGTGCAG CTGGACGATT TCGGTACCGG CTTCTCGGCG
CTGTCCTACC TGCACCGCTT CCCGATCAGC ACGCTGAAGA TCGACCAGAG TTTCATCGCT
GGCCTGCATG GACCGGAAGT GCAGAGCACG CGCGCATTGG TCGAGGGCGT GCTGTCGCTG
GCGCGCACGC TGGGCATCGA GACCATCGGC GAGGGCATCG AGACCGAGGC GCAGCAGCAG
ACGCTGCGCG AACTCGGCTG CGACTATGGC CAGGGCTACC TGCTGGGGCG GCCGGCACCG
TGGGGCTGCG CGGCGGCCTG A
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| Protein sequence | MSTHAEPAEE PLHEAVLSTA LVRALHALLP ETAVVRVGWD DLQLGRGEGG WPPVSGDRPA
VPAGIGDGQH GWDYDGARLL LSVEGAIPSP AWWGLARQAM ELALQRGRQA GQIKALEEAE
RLQQALFQIA DLAGADLEMG EMLRHVHGVL GTLMYAENCY IVEYDDVRDQ IRFLYFADQV
DDFVANPAQS HDASEMPRSL TVALLRHGKP LSGPSRELLA RVVEQEHDPQ RGPESLDWLG
VPMLRDGRVC GAIVVQSYEH AARYGESERA LLGFVAQHVQ TAMDRRQAQV RLEQQVERRT
QQLQRANHSL QDEVAERRRA EQLQTALYNI AEMAMSADSL AQFYGRVHGV VGRLLDARNF
YIALVNAAGN GLDFVYSVDE HNASRAPRPF SRGLTEYVVR NRRPLLASRA QIDALLANGE
VRESGARSHC WLGVPLLRDD EVVGAIVVQS YSQNSTFSVH DQRLLTFVAQ NIGTGLARQR
DQQRLRSAHA ELEKRVEERT RELAEVNEKL LGQIGERLRA EQRLTHQAMH DALTGLPNRL
HLLDRLQDAL ALARREGGPV FAVLFLDLDR FKLVNDSIGH AAGDRMLVEV AKRIVSMAGT
DDVVARLGGD EFAVLLQCPQ GLAQALDFGQ RLLLALQESM WIAGRELFPS GSLGIALWNP
RYRTGEELLR DADAAMYRAK AQGHDRCAIF DEDMREQAMR SLDLEADLRR AINNHDFLPF
YQPIVRLSDG EVVGHEALLR WQHERRGLLL PGAFLELGEE SGLIEQVDWL IYEQVIAGLA
EGGHTYVSVN VSPRHFRSAE FSGRLFGLLD AYGADPQRLR LEITEVALLD DGPHTLRILQ
GLRERGIQVQ LDDFGTGFSA LSYLHRFPIS TLKIDQSFIA GLHGPEVQST RALVEGVLSL
ARTLGIETIG EGIETEAQQQ TLRELGCDYG QGYLLGRPAP WGCAAA
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