| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smal_1610 |
|---|
| Symbol | |
|---|
| ID | 6475480 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Stenotrophomonas maltophilia R551-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011071 |
|---|
| Strand | - |
|---|
| Start bp | 1808735 |
|---|
| End bp | 1809358 |
|---|
| Gene Length | 624 bp |
|---|
| Protein Length | 207 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 642730792 |
|---|
| Product | RNA polymerase sigma factor |
|---|
| Protein accession | YP_002027998 |
|---|
| Protein GI | 194365388 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
|---|
| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 0.243995 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCCTCG CCCTTCCCAC CACCGCCACC GGCTATGCGC CACCGCCTGC AGGCCTTACC
CTGTACGCCG TGGAAGCCAG CGCACTGCCA ACCGATGAAG CCTTGATGCT GGCCTGGGCC
GGTGGCGACC TGCGTGCGTT CGAAAGCCTG TATGCGCGCC ATCGCAAGCG CCTGTTCGGC
TTCCTGCTGC GGCAACTGCG CGACAACGCG CTGGCCGAGG AGATCTTCCA GGATGTGTGG
CAGCGGGTGA TCAGCGCTCG CGCCGGCTGG CAGCCCGAAG CGGCGTTCAG TACCTGGCTG
TTCCGCATCG CCCATAACCG CTTGAACGAC CACTGGCGCG CCGCCCGCCA TCGCCCCGCT
GCACCGGCCG ACGCCGACCT GCGCCTGGCC GCGATCGAGG ACGGGCAGAC CCCGGAAGCC
GAGCTTTCCG AATTCGAACA GCGTCGCCGC ATCCAGCTGG CGATGGAGCA ACTGCCGCCC
GAGCAGCGCG AAGTGCTGCA GCTGCGGCTG GATCAGGAAC TGAGCCTGGA GGAGATCGGC
CAGATCACCG GCGTGGGCCG GGAAACCGTG AAATCGCGGC TGCGCTATGC GATGGACAAG
CTGCGTGCGG GATTGAACGC ATGA
|
|---|
| Protein sequence | MTLALPTTAT GYAPPPAGLT LYAVEASALP TDEALMLAWA GGDLRAFESL YARHRKRLFG
FLLRQLRDNA LAEEIFQDVW QRVISARAGW QPEAAFSTWL FRIAHNRLND HWRAARHRPA
APADADLRLA AIEDGQTPEA ELSEFEQRRR IQLAMEQLPP EQREVLQLRL DQELSLEEIG
QITGVGRETV KSRLRYAMDK LRAGLNA
|
|---|
| |