| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smal_1492 |
|---|
| Symbol | |
|---|
| ID | 6475357 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Stenotrophomonas maltophilia R551-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011071 |
|---|
| Strand | + |
|---|
| Start bp | 1681643 |
|---|
| End bp | 1684576 |
|---|
| Gene Length | 2934 bp |
|---|
| Protein Length | 977 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 642730670 |
|---|
| Product | TonB-dependent receptor |
|---|
| Protein accession | YP_002027880 |
|---|
| Protein GI | 194365270 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
|---|
| TIGRFAM ID | [TIGR01782] TonB-dependent receptor |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 0.442431 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGCAACA CGCTCTACCT GTCAATCATC CTCGCCCTGT CTCCCTGCAG CGTACCGCTG
GCAGCCGCGG CCACTGCCGA TGGCCTCGAG GCGCGCGTGC CGGCTCCGAT CGCGGCGCAG
CCGCTGGCGC GTGCGCTGGA GCAGTTGTCG CGCAGTTCCG GCGTGCAGTT CCTGTACTCG
GGCAGCGGTG AAGCACGCAT GGCCGGGGCG GTGCCGCGTG GTGCGACCGT CAAGCAGGCA
CTGGACGCGC TGCTGGCAGG AACCGGCCTG GGCTACACCG TGGTGGACGG CAACGTCATC
GCCATCGATC CGGCGCCCGC ACGCAACGAA CCGAAGCGGG CCGCGCCGAA GCCGCGCGAG
GCCGAGGCGG TGGTGGCGCC GACCCTGGAC ACGGTGAAGG TGATTGCTGC ACATGAGGTG
ATCGACCAGA AAAAGACCTC GCCGGTGATC AAGGATTCGG TGGTCTACGA CGAGATGGAC
AGCTACGGCG ACGAAACCCT GGCCGAGAGC CTGATGGCCG CGCCGGGGCT GAGCGCGGTG
GAAGACGCCG GCGAGCCGCG TTACGTGACG GTGCGTGGCG TGCAGGCCAA CCTCAACTAC
ACGACGATCG ATGGCATCGC GATTGCCAGT GTCGGTGGCA GTGGCTCGGG TGAGCGCATG
AACAACCTGC AGCTGATCCC CAGCGACATT GGCACCCGTA CCGACATCTA CAAGAGCTTC
AGTGCCGAGC AGGCGCCGGA TGCCATCGGC GGCGTGATCG ACATCATCAG CCGCAGCGCG
TTCGACCGGT CCGGCAGGTA CGTGTTCGCC GATATCGCCG GCATCTATTC CACCGCTGAA
ACCAACGTCG AGCGCAGCGC CGGCGGTGAT CACAAGACCC TCGGCCACTT CGGCAAGAGC
GCCAAGATGG TGTTCTCCAA CCAGTTCGGC GCCGACCAGG AATTCGGCAT CGTTGCGGTG
GCCCGCTATG AGCAGCGCTC GCGCAACAGC GTCAAGCGCT GGGTGGAGTC GAACTACTAC
TACAACGACG CCGGCAAGTA CCTCACCGAC GGCACCACTG GGCCGGACGA GGCCAAGGGC
TGGAACGGGC TGCGTGCGCC CGGCAATTTC AGTACCGGTA CCTACACCAA CTTCATCACC
AATTTCGGTG GATCGGCCAA GCTGGAATGG AAACCGTCGG ACGATCCGTT CTACGCGTCG
CTGCTGCTGT ACTCGTACCG GTTCTACGAG AACTCGACGA TGAACAAGAC CGACCTGTAC
GGCAACGCCA AGTTTCCGGT CCGCAACCAG ACCAATGACA GCGGCACCAC CCAGATCAAC
AGCATCTACA TCAAGAACCG GCATGATCGT TGGGATCGCA GCAATCGCGG CGCCATCGCC
AGCTTCAACT GGGACATTGG TGACCGTTCG CGGTTGACCC TGCGTGGCGG CCACACCGAA
GAAACTTTCC ACAACAGCCA GGTCTACTGG GGTGTGCGCG CTTATCCGAG CAACCTGTTC
GTCGACTACG AGAACGACAG TCACGGCTTC CCCAACGCGG TGGCGGTGTC CGATTCCAGC
CTGTTGACCA GCTCGGCCTT CAAGCTCAAC CCGGCACAGG CCTATGTCTC GCCGCGTGAT
GCCAAGGAGA GCATCGACAA CCTGCGCGCC GACTTCAGCT ACAACATTGA TGCCGATGCG
CGCGGCTTCG GCCTGGCTGC CGGTGCCGAA TACCGCCACC TGAAGATCTG GCAGGACATC
GACTTCGACT ACTTCAAGAG CAGCGCGACG CTGAACGACT ATCTGTACCC CGGCTCGACA
CTGCTGGGCA GCGTGCCGGG CTTTCCGCTG ATCGACAATC GCAAATGGAA TGACGAACTC
GCGCCCACGC TTGGCGGCAA CGACGCGGCC TATCCGAATG CCGATTTCAC CAGTGACTAC
AAGTACGTTG AGGACATCAC CAATGCCTAT GTCTCCGCGC ACTATGCCTG GGATCGGCTG
TTGCTGATCG GTGGCCTGCG CTACGACCAC ACCACCTTCG ATGCATTCAG CCCTTTCAGT
GATGATGGCG GTGCCACCTA TACCTCCGCG TTCCGCAGGA CCAGTGGTGG CTACAACAAC
CTGCTGCCGT CGTTGAACGC AACCTTCAAG CTGACCGACG ACCAGCGCCT GCGATTCTCC
GCCAGCCGAA CGCTGGGCCG GCCGACACCC AGCAACATCG CCCAGGCCAC CAGCACCAGC
TGTGGCGATG ACGAGGAGGG CAGAGGCTTC TGCACGATCA AACAGGGCAA CGCCAACCTG
CAGCCGCGCC GCTCCACTAA CATCGACCTG GCCTGGGACC TGTATTTCAA CGACAACAAC
GGCCTGGTCT CGGTCGCGCT GTTCGACAAA GTGATCAAGG ACGACATCTA CACCCTGACC
ACGTTCGAGA ACGTGGGTGA TACCCGCTAC CGGGTCACCC AGCCGATGAA CACCGACGCG
TCCAAGCTGC GCGGCGTCGA GTTCGCGGTG GCCAACCGCA ACCTGCAGTG GCGCCGCCAG
CGCTTTGATA TGTATTTCAA CGCCACGCGG CTGGAAGGCC AGACCAACTA CCGCATCAGT
GATGGCAGCG AGCGCCGCCT GGACCGCCTG CTGTACCAGC CGGACTGGTC GCTCAATGGG
TCGGTGATCT GGCGCATGCC ATGGAAGAGC GCACAGCTGC GCATGTCCGG CACCTACCGC
AGCCGGATGC TGGTCGACTT CGGTGATACC CAGTGGCTGG ACTCGTACTA CGACCCGTAC
ATGACCTTCA ACATGGCCTT CAGCCACAAG GTCAGCAAGC ACGTGACGCT GAAGTACGAG
GCCAAGAACC TGTTCAACAC GCAGCCGACC TACAGCACTG GTCCCAACGG TCGCTTCCGC
ACCGAGATCG ACGACTACGG CCGCTTCTTC TACTTCCACA TCATCTACAA CTGA
|
|---|
| Protein sequence | MRNTLYLSII LALSPCSVPL AAAATADGLE ARVPAPIAAQ PLARALEQLS RSSGVQFLYS
GSGEARMAGA VPRGATVKQA LDALLAGTGL GYTVVDGNVI AIDPAPARNE PKRAAPKPRE
AEAVVAPTLD TVKVIAAHEV IDQKKTSPVI KDSVVYDEMD SYGDETLAES LMAAPGLSAV
EDAGEPRYVT VRGVQANLNY TTIDGIAIAS VGGSGSGERM NNLQLIPSDI GTRTDIYKSF
SAEQAPDAIG GVIDIISRSA FDRSGRYVFA DIAGIYSTAE TNVERSAGGD HKTLGHFGKS
AKMVFSNQFG ADQEFGIVAV ARYEQRSRNS VKRWVESNYY YNDAGKYLTD GTTGPDEAKG
WNGLRAPGNF STGTYTNFIT NFGGSAKLEW KPSDDPFYAS LLLYSYRFYE NSTMNKTDLY
GNAKFPVRNQ TNDSGTTQIN SIYIKNRHDR WDRSNRGAIA SFNWDIGDRS RLTLRGGHTE
ETFHNSQVYW GVRAYPSNLF VDYENDSHGF PNAVAVSDSS LLTSSAFKLN PAQAYVSPRD
AKESIDNLRA DFSYNIDADA RGFGLAAGAE YRHLKIWQDI DFDYFKSSAT LNDYLYPGST
LLGSVPGFPL IDNRKWNDEL APTLGGNDAA YPNADFTSDY KYVEDITNAY VSAHYAWDRL
LLIGGLRYDH TTFDAFSPFS DDGGATYTSA FRRTSGGYNN LLPSLNATFK LTDDQRLRFS
ASRTLGRPTP SNIAQATSTS CGDDEEGRGF CTIKQGNANL QPRRSTNIDL AWDLYFNDNN
GLVSVALFDK VIKDDIYTLT TFENVGDTRY RVTQPMNTDA SKLRGVEFAV ANRNLQWRRQ
RFDMYFNATR LEGQTNYRIS DGSERRLDRL LYQPDWSLNG SVIWRMPWKS AQLRMSGTYR
SRMLVDFGDT QWLDSYYDPY MTFNMAFSHK VSKHVTLKYE AKNLFNTQPT YSTGPNGRFR
TEIDDYGRFF YFHIIYN
|
|---|
| |