| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smal_1456 |
|---|
| Symbol | truD |
|---|
| ID | 6475320 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Stenotrophomonas maltophilia R551-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011071 |
|---|
| Strand | + |
|---|
| Start bp | 1641278 |
|---|
| End bp | 1642309 |
|---|
| Gene Length | 1032 bp |
|---|
| Protein Length | 343 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 642730633 |
|---|
| Product | tRNA pseudouridine synthase D |
|---|
| Protein accession | YP_002027844 |
|---|
| Protein GI | 194365234 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG0585] Uncharacterized conserved protein |
|---|
| TIGRFAM ID | [TIGR00094] tRNA pseudouridine synthase, TruD family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATTCCGC TGCCGCTCGC GTTCGGCGCG CCGCTGCTGA GCGCACGCAT CCGCACCACG
CCGGAAGATT TCCAGGTTGA CGAACTGCCG GCCTTCGAGG CCACCGGCGA AGGCGAGCAC
CTGCTGCTGC ATATCCGCAA GCGTGGAGCC AACACCGTGC ACGTGGCCAA GTTGCTGGCC
ACATGGGCCG GCCTACCGGA AATGGCGGTG AGCTATGCCG GCATGAAGGA TCGGCACGCG
GTCACCACCC AGCGCTTCAG CGTGCACCTG CCCAAGCGCG TGGCACCTGA CCTGGCCACG
CTGGCCAGTG ATGAAATCGA AGTGATCGAA TCCACCTGGC ACAACCGCAA GCTGCAGCGT
GGCGCGCTGG CCGGCAACCG CTTCAAGCTG GTGCTGCGCG ACGTGCAGGG TGATGCCGCG
GCGATCAGCG AGCGCCTGCA GCAGATCGCA GAGCGGGGCC TGCCGAACTG GTTCGGCGAG
CAGCGTTTTG GCCGCGACGG TGGCAACGTG CCGGCGGCGC TGGCGATGTT CGGTGGCCGT
CGCATGCGCA AGGACCAGCG TTCACTGCTG CTGTCGGCGG CCCGCTCGGC GCTGTTCAAC
CGCGTGCTGG CCGCGCGCGT GGAGCAGGGC AACTGGGACC AGCCGCTGGA TGGCGAAGTG
TGGATGCTCG ATGGCAGCCG CAGCGTGTTC GGCCCCGAGC CGTATACCGA CGTACTGGCC
GAGCGCCTGG CGCGCTTCGA CATCCACCCC AGCGCACCGC TGTGGGGCGA AGGTGAACTG
CGCAGCACCG AAGCGGCACA CGCGCTGGAG CTGGCGGCGC TGGATGACGA CGAATCCAGG
GCGCTGCGTG CAGGTCTGGA AGACGCGCGC CTGAAGCAGG AGCGCCGCGC ACTGCGCCTG
CGTCCAGCGT TGCTGCAGCA CCAGTGGCTG GCCGACGACG TGCTGGAACT ATCGTTCGCG
CTGCCGCCGG GCTGCTACGC CACCGCCGTG CTGCACGAAC TCGGCCCCGT CGAAGACGCC
TCGCAGGCCT GA
|
|---|
| Protein sequence | MIPLPLAFGA PLLSARIRTT PEDFQVDELP AFEATGEGEH LLLHIRKRGA NTVHVAKLLA
TWAGLPEMAV SYAGMKDRHA VTTQRFSVHL PKRVAPDLAT LASDEIEVIE STWHNRKLQR
GALAGNRFKL VLRDVQGDAA AISERLQQIA ERGLPNWFGE QRFGRDGGNV PAALAMFGGR
RMRKDQRSLL LSAARSALFN RVLAARVEQG NWDQPLDGEV WMLDGSRSVF GPEPYTDVLA
ERLARFDIHP SAPLWGEGEL RSTEAAHALE LAALDDDESR ALRAGLEDAR LKQERRALRL
RPALLQHQWL ADDVLELSFA LPPGCYATAV LHELGPVEDA SQA
|
|---|
| |