| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smal_1378 |
|---|
| Symbol | |
|---|
| ID | 6475233 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Stenotrophomonas maltophilia R551-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011071 |
|---|
| Strand | + |
|---|
| Start bp | 1568815 |
|---|
| End bp | 1569330 |
|---|
| Gene Length | 516 bp |
|---|
| Protein Length | 171 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 642730546 |
|---|
| Product | putative type IV pilus assembly protein FimT |
|---|
| Protein accession | YP_002027766 |
|---|
| Protein GI | 194365156 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG4970] Tfp pilus assembly protein FimT |
|---|
| TIGRFAM ID | [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 0.142156 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 38 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCTTTGC GCCGGCAAAA CGGCTTCACA TTGATTGAGT TGATGGTCAC GCTGACCGTC
TTCGTGATCC TGGCGTCGAT CGCCTATCCC AGTTTCCGCG GCATGATCCG CTCGAACCGC
CTGGCGACCG CCAACAATGA ACTGATTGCG CTGACCGGCC TGGCGAGAAG CGAAGGCATC
CGCAACAGCC GGGGTGGTGG CGTCTGTGGC AGTACCGATG GCACCGGTTG CGATGGCGAG
TGGTCCAAGG GCGTCCTGGC ATGGTCGGAT CTCGATGGAG ATGGCCAGTT GGGGAGCAGT
GACACCGTGT TGCGGTTTTC GCAGGGCAAC CCTCAGTTGA GCGTGGTGGG GCCTGCGGGC
GCGACCATCG CGTTCGACGG TCGCGGCCGG CGCAGGGCGG CTGCGGACCA GACGCTGGTG
CTGTCGCCGG ACACCTGCAA GACCGGTGAG CCCAAGAGTA CGTTGACGAT CAACCAGTCC
GGCCAGGTCC GGGCGACCAA GGGGACCTGC TCATGA
|
|---|
| Protein sequence | MSLRRQNGFT LIELMVTLTV FVILASIAYP SFRGMIRSNR LATANNELIA LTGLARSEGI
RNSRGGGVCG STDGTGCDGE WSKGVLAWSD LDGDGQLGSS DTVLRFSQGN PQLSVVGPAG
ATIAFDGRGR RRAAADQTLV LSPDTCKTGE PKSTLTINQS GQVRATKGTC S
|
|---|
| |