Gene Smal_1289 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmal_1289 
Symbol 
ID6475141 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameStenotrophomonas maltophilia R551-3 
KingdomBacteria 
Replicon accessionNC_011071 
Strand
Start bp1469136 
End bp1470725 
Gene Length1590 bp 
Protein Length529 aa 
Translation table11 
GC content65% 
IMG OID642730454 
Productdrug resistance transporter, EmrB/QacA subfamily 
Protein accessionYP_002027677 
Protein GI194365067 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG2814] Arabinose efflux permease 
TIGRFAM ID[TIGR00711] drug resistance transporter, EmrB/QacA subfamily 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value0.433628 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones24 
Fosmid unclonability p-value0.278369 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCCGCAC AAGCTCCAGC CGCGCCCGGC ACTCCGGGCG CACCGGCGGC GCCGGGTGCG 
GCCTCCGGGT TCCTGCCGCC CAGCGTCGCC CTGTGCACCA TCGGCCTGGC AATGGCGTCG
TTCATGCAGG TGCTCGACAC CACCATCGCC AACGTCTCGC TGCCGACCAT CGCCGGTAAT
CTCGGTGCCA GTTCGCAGCA GGCGACCTGG GTCATCACCT CGTTCGCGGT CAGCACGGCC
ATCGCGCTGC CGCTGACCGG CTGGCTCAGC CGTCGCTTCG GCGAACGCAA GCTGTTCGTC
TGGGCCACGC TGGCGTTCGT CATCACTTCG CTTCTGTGCG GCCTGGCGCA GAGCATGGGC
ATGCTGGTGC TGTCGCGTGC GCTGCAGGGC TTCGTGGCCG GCCCGATGTA CCCGATCACG
CAGTCGCTGC TGGTCTCGAT CTATCCACGC GAGAAACGCG GACAGGCGCT GGCGCTGCTG
GCGATGATCA CCGTGGTGGC GCCGATCTGC GGGCCGATCC TCGGTGGTTG GATTACCGAC
AACTACAGCT GGGAATGGAT CTTCCTGATC AATGTGCCGC TGGGTATCTT CGCCGCGCTG
GTGGTGGGCA ACCAGCTGAA GGGGCGCCCG GAGCACATCG AGAAACCGAA GATGGACTAC
GTCGGCCTGG TCACGCTGGT GATCGGTGTC GGCGCACTGC AGCTGGTGCT CGACCTGGGC
AACGACGAAG ACTGGTTCTC GTCGATGAAG ATCGTGGTGC TGGCCTGCGT GGCGGTGGTG
ACGCTGACCG TGTTCCTGAT CTGGGAATTG ACCGACAAGG ATCCGATCGT CGACCTGAAG
CTGTTCCGGC ACCGCAACTT CCGCGCCGGT ACGCTGGCAA TGGTGGTGGC CTATGCGGCG
TTCTTCAGCG TGGCGTTGCT GATCCCGCAG TGGCTGCAGC GTGACATGGG CTACACCGCG
ATCTGGGCTG GCCTGGCGAC GGCGCCGATC GGCATCCTGC CAGTGATCAT GACCCCGTTC
GTGGGCAAGT ATGCATCGCG CTTCGACATG CGCATGCTGG CAACCATCGC CTTCGTGTTC
CTGTCGATGA CCAGCTTCCT GCGCTCCGGC TTCAACCTGC AGGTGGACTT CCAGCACGTG
GCCGGCGTGC AGCTGATCAT GGGCATCGGC GTGGCCTTGT TCTTCATGCC GGTGCTGCAG
ATTCTGCTGT CGGACCTGGA TGGCCGCGAG ATCGCGGCGG GCTCCGGCCT GGCCACGTTC
CTGCGTACGC TGGGCGGCAG CTTCGCGGCA TCGTTGACGA CGTGGCTGTG GGCGCGCCGT
ACCCAGGTGC ATCATGCGGA CCTGACCGAG CATATTTCGG TCTACCAGCC GGGCATGCAG
GACCAGGTAG CGGCGATGGG GCAGGGCGAC CTGCAGCATG GCGCAGCGGT ACTGAACAAC
ATGATCAACC ACCAGGCTTC GCAGATGGGC TTCAACGACA TCTTCTTCCT GCTGGGCTGG
ATCTTCCTGG CGATCATCAC CTTCCTGTGG CTGGCCAAGC CGCCGTTCGG TGCCGGTGCC
GGTGCAGCCT CTGCGGGCGG CGGGCACTGA
 
Protein sequence
MSAQAPAAPG TPGAPAAPGA ASGFLPPSVA LCTIGLAMAS FMQVLDTTIA NVSLPTIAGN 
LGASSQQATW VITSFAVSTA IALPLTGWLS RRFGERKLFV WATLAFVITS LLCGLAQSMG
MLVLSRALQG FVAGPMYPIT QSLLVSIYPR EKRGQALALL AMITVVAPIC GPILGGWITD
NYSWEWIFLI NVPLGIFAAL VVGNQLKGRP EHIEKPKMDY VGLVTLVIGV GALQLVLDLG
NDEDWFSSMK IVVLACVAVV TLTVFLIWEL TDKDPIVDLK LFRHRNFRAG TLAMVVAYAA
FFSVALLIPQ WLQRDMGYTA IWAGLATAPI GILPVIMTPF VGKYASRFDM RMLATIAFVF
LSMTSFLRSG FNLQVDFQHV AGVQLIMGIG VALFFMPVLQ ILLSDLDGRE IAAGSGLATF
LRTLGGSFAA SLTTWLWARR TQVHHADLTE HISVYQPGMQ DQVAAMGQGD LQHGAAVLNN
MINHQASQMG FNDIFFLLGW IFLAIITFLW LAKPPFGAGA GAASAGGGH