| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smal_1229 |
|---|
| Symbol | |
|---|
| ID | 6475081 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Stenotrophomonas maltophilia R551-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011071 |
|---|
| Strand | + |
|---|
| Start bp | 1398389 |
|---|
| End bp | 1399459 |
|---|
| Gene Length | 1071 bp |
|---|
| Protein Length | 356 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 642730394 |
|---|
| Product | diguanylate cyclase |
|---|
| Protein accession | YP_002027617 |
|---|
| Protein GI | 194365007 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2203] FOG: GAF domain
[COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 0.586021 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 0.0822929 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATCAAGC CCGACAAGCC TGCCAACGAA GCCCTTCGGC TCGAGGCGCT GTACCGCTAC
CGGATCCTGG ATTCGCAGCG TGAGAAATCC TTCGACGACC TGGTCGCGAT CGCCAAGGCG
GTCTGTGGCA CGTCGATGGC GGCGGTGACC CTGATCGATG TGGAACGGCA GTGGTTCAAG
TCGATCCAGG GCATCGACGC GGCGGAGAAC CTGCGCAGCG ATTCGATGTG TGGCCACGCC
ATCCTGCAAC CGCAGGAAAT CATGGTGGTG GAGGACGCGT TGCAGGACGT CCGCTTCCAT
GACAACCCGG TGGTGACCGG CGACCCGCAC ATCCGCTTCT ATGCCGGCGC GCCGCTGATC
AGTTCCGATG GCCTGCCACT GGGCACGCTG TGCGTGTTCG ATGCGCATCC GCAGCACCTG
CCCAGCGACA AGGCCGAGGC GCTGGCGGCA TTGTCGCGGC AGGTGATGCT GGTGATGGAG
CTGCGCCGTT TCGCGCTCGA CATCCAGAAG CACATGCTGG AACGTGATGA TTACGAGCGC
CTGCTGTCGG AATACCAGGA CGTGCTGCTT GCACAGAATG CCGACCTGGC CGAGCAGAGC
CGTACCGATG CGCTGACCGG CCTGCCCAAT CGCCGCGCGA TGGCGGCGGC GCTGGAAGAG
GCGGTTGCGG TGGTGGATGA TCAACCCGGC GTCGCCTGCG TTGCGCTGCT CGACATCGAT
CATTTCAAGC ACATCAACGA TTTCCAGGGC CACGCCACCG GTGACCGGGT GCTGGCCGAG
CTGGGTGTGC TGCTGCGCTC GCACTTCGCC GGCCGCGGCA TGGCTGCGCG CTACGGCGGC
GAGGAGTTCG TGGCGGTGAT GCCGTCGACC GACCTGCACA CGGCCGAACT GCAGTGCGAG
TTCCTGCGCC TGGCGGTGGC CGACCTGCCG CTTGGATTCC CGGTCACGGT CAGCATCGGT
GTTGCCCAGC ACCAGCCGGG TGAAAGTGTG GATGACACGC TGGCCCGCGC CGACAAGGCG
CTGTACCGGG CCAAGGGCAA TGGCCGCAAC CGGGTGGAAC GGGCGGGCTG A
|
|---|
| Protein sequence | MIKPDKPANE ALRLEALYRY RILDSQREKS FDDLVAIAKA VCGTSMAAVT LIDVERQWFK
SIQGIDAAEN LRSDSMCGHA ILQPQEIMVV EDALQDVRFH DNPVVTGDPH IRFYAGAPLI
SSDGLPLGTL CVFDAHPQHL PSDKAEALAA LSRQVMLVME LRRFALDIQK HMLERDDYER
LLSEYQDVLL AQNADLAEQS RTDALTGLPN RRAMAAALEE AVAVVDDQPG VACVALLDID
HFKHINDFQG HATGDRVLAE LGVLLRSHFA GRGMAARYGG EEFVAVMPST DLHTAELQCE
FLRLAVADLP LGFPVTVSIG VAQHQPGESV DDTLARADKA LYRAKGNGRN RVERAG
|
|---|
| |