| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Smal_1228 |
|---|
| Symbol | |
|---|
| ID | 6475080 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Stenotrophomonas maltophilia R551-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011071 |
|---|
| Strand | + |
|---|
| Start bp | 1397522 |
|---|
| End bp | 1398244 |
|---|
| Gene Length | 723 bp |
|---|
| Protein Length | 240 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 642730393 |
|---|
| Product | pseudouridine synthase |
|---|
| Protein accession | YP_002027616 |
|---|
| Protein GI | 194365006 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
|---|
| TIGRFAM ID | [TIGR00093] pseudouridine synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 0.481726 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 0.0793814 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCACCC GACTCAACAA ACATATCGCC GACACCGGCT TCTGCTCCCG CCGCGAGGCC
GATCGCCTGA TCGCCGCCCG CCGGGTCACC GTCAACGGCC ACCCGGCCGG TACCGGCGCG
GTGGTGGGCG AAGAAGACCA GGTGCTGGTC GACGGCCAGC CGCTGCGCGC GCGCGTTGCA
CGCAAGCCCG GTACCCGCCG CCACGTCTAC ATCGCGCTGA ACAAGCCGGT GGGCGTGACC
TGCACCACCG AAACCTCGGT CAAGGGCAAC ATCGTCGACT TCGTTGGCCA TGAGCAGCGC
ATCTTCCCGA TCGGCCGCCT CGACAAGGAG TCGGAAGGGT TGATCCTGAT GACCAGCAAC
GGCGACATCG TCAACCAGAT CCTGCGCGCC GAGAATGGCC ACCAGAAGGA GTACCTGGTA
GCGGTGAACA AGCCGGTCAC CGACGAATTC CTGCGTGGCA TGGCCCGCGG CGTGCGCATC
CACGACCAGA TGACGCTGCC GTGCAAGACC TCGCGCATCG CCAAGTTCGG TTTCCGCATC
ACCCTGCAGC AGGGCCTGAA CCGGCAGATC CGCCTGATGG CTGCCGAGTT CGGCTATCGC
GTGACCCAGC TGCGCCGCGT GCGCATCGAC AACATCAAGA TCGGCGCGCT GAAGCCGGGC
CAGTGGCGCA ACCTGACCGA GCAGGAACTG CAGGGCCTGC TGCCGAAGCA GCTGGACTGG
TAA
|
|---|
| Protein sequence | MTTRLNKHIA DTGFCSRREA DRLIAARRVT VNGHPAGTGA VVGEEDQVLV DGQPLRARVA
RKPGTRRHVY IALNKPVGVT CTTETSVKGN IVDFVGHEQR IFPIGRLDKE SEGLILMTSN
GDIVNQILRA ENGHQKEYLV AVNKPVTDEF LRGMARGVRI HDQMTLPCKT SRIAKFGFRI
TLQQGLNRQI RLMAAEFGYR VTQLRRVRID NIKIGALKPG QWRNLTEQEL QGLLPKQLDW
|
|---|
| |