Gene Smal_1227 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmal_1227 
Symbol 
ID6475079 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameStenotrophomonas maltophilia R551-3 
KingdomBacteria 
Replicon accessionNC_011071 
Strand
Start bp1395823 
End bp1397487 
Gene Length1665 bp 
Protein Length554 aa 
Translation table11 
GC content70% 
IMG OID642730392 
Productdiguanylate cyclase 
Protein accessionYP_002027615 
Protein GI194365005 
COG category[T] Signal transduction mechanisms 
COG ID[COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain 
TIGRFAM ID[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value0.594022 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value0.072002 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGGGCGTCA GGCAGTGGCG GTACGAAACA GGGACGCTGC TGGTCGTCCT GCTGATGGGA 
GTGCTGTTTC CCGATCCGGC GCACGCGCGC ATGGCCGAGG CCGGCCGGGA TTTCCTGCTG
GTTGGTGCAC CTACGGATGA ACCGACGCCG CATCGTGGCT GCACGCCCGC GATGCTGGCC
GGGCCACGCG AGCAGGTAGA GGTATCGGCG CCTCCCGGGG GCTGGTCGGG GCAACCCCAG
GCCCTGGATG TGTTCAACGT GTTCGCTGGC GAAGTCCGCG TACAGCATGG CGACCGCGAG
ATCTGCGGCA ACATGCACGA TGCACGCACC CGTGATTCGC GCTTCCGTGC CGGCATCGGC
CTGGTGGCGG TGCCGGCGGC TGGCAGCCAT GAGCCGTTCC TGGTGTCGTG GCAGGCGCCG
CTGAAGGCGC GCTGGGTGCC GACGTTGCGG CTGGGTGCGC CCAGTCCGGT CCAGCAGAAC
GATACCGCCC GCCTGCTGGT GCGCGCGGCG TGCATCGCGG TGGCGATCGC GCTGGCGCTG
TCGGCATTGA TGGCTTACCT GACCACCCGT GACCGCAGCT TCCTGGTCTA CATCGGCGCG
ACGTTCGTGG TGGTGTTGTG GCAGGCGATT CTTGGCGGCT TGAGCGGCTA CCCCGAACCC
TGGCTGCCGG TGGGGGAGCG CGGCGCATGG TGGCTGCTGG CGCTGACCGC TGCGACCCAG
GCGCTGGTAC TGCCTGCTCT GTGGCGCCTC AACGGCGGGG ACCGCCTGCT GCCACGCTCG
CGGCCGGCAC AGCAGGGCGT GCTCTGGGGC CTGCTGGGGC TGGCCGCGCT GGTGCCGTGG
CTGCGCTGGG AAACCCTGGC GCTGGTCGCG GAGGGCCTGC AGCTGAGCTT CATCCTCGGT
TGCCTGCTGT CACTGGCCGC CGGCATACGG GCGTGGTTGC GTGGTGACTG CTGGGCGCTG
GCAGGCCTGG CGGCGCTGGT GCCGCTGCTG GTGATGATCG CCGCCGATGC CAGCAGTGCG
GGGTGGCTGC TGGAATACCG GGTGGAAGCG CTGCAGCTGT CGGTGACCTG GCTGCTGATG
ATGGCCGCCT ATGCCATGAA CCAGCGGCTG GGCCGACTGC GCCAGCAGCG CGATGAACTG
CGCCAGCTGG CCGAAACCGA TGGCCTGACC GGGCTACCCA ACCGCAGGGC CGGCCTGCAG
CAGCTGGCCC GTCACCTGGC GCAGGTCGAC CGTGAGCGCG GCCCGCTGGT GATCGGTTTC
CTGGACATCG ACCTGTTCAA GGACATCAAC GACCGCCATG GCCACGCGGT GGGCGACCAG
GTGCTGGTGG CGGTAGCGCG AGCCCTGCGC ACGGCAGTCC GCAGCCAGGA CGAAGTGGTG
CGGATGGGCG GCGAGGAGTT CCTGCTGCTG ATGCCGGGCA TGCCGCGCGA AACGGCGTCG
GCCCGGCTGG ATCGGCTGCG CCAGCGCATC ATCGAGGCCG GCCAGGCATT GCAGGTCCCT
GGGCTGGAGG TCACAGCCAG CATCGGGCTG GCACAGTGGC GGCCGGGCGA GGATGATCTG
GCCGCGCTGC TACGCCGGGC CGACCATGCC ATGTACGTGG CCAAGCGGGC GGGCCGCAAC
CGGGTCTTCG ATGGTGAAGA ACTCGATCCA CCCGTGCCGG AATGA
 
Protein sequence
MGVRQWRYET GTLLVVLLMG VLFPDPAHAR MAEAGRDFLL VGAPTDEPTP HRGCTPAMLA 
GPREQVEVSA PPGGWSGQPQ ALDVFNVFAG EVRVQHGDRE ICGNMHDART RDSRFRAGIG
LVAVPAAGSH EPFLVSWQAP LKARWVPTLR LGAPSPVQQN DTARLLVRAA CIAVAIALAL
SALMAYLTTR DRSFLVYIGA TFVVVLWQAI LGGLSGYPEP WLPVGERGAW WLLALTAATQ
ALVLPALWRL NGGDRLLPRS RPAQQGVLWG LLGLAALVPW LRWETLALVA EGLQLSFILG
CLLSLAAGIR AWLRGDCWAL AGLAALVPLL VMIAADASSA GWLLEYRVEA LQLSVTWLLM
MAAYAMNQRL GRLRQQRDEL RQLAETDGLT GLPNRRAGLQ QLARHLAQVD RERGPLVIGF
LDIDLFKDIN DRHGHAVGDQ VLVAVARALR TAVRSQDEVV RMGGEEFLLL MPGMPRETAS
ARLDRLRQRI IEAGQALQVP GLEVTASIGL AQWRPGEDDL AALLRRADHA MYVAKRAGRN
RVFDGEELDP PVPE